Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.6e-298 1027.3 589 100.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.0e-225 786.9 595 77.3
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.0e-224 782.7 601 75.4
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-162 577.4 606 56.8
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.1e-162 576.6 624 55.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.9e-159 566.2 608 56.2
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 5.3e-137 492.3 618 50.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.5e-136 490.7 596 53.2
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.6e-133 480.7 598 52.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.3e-132 477.6 550 55.3
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.9e-132 476.1 597 49.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.3e-130 471.1 607 49.1
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-128 464.5 553 53.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.7e-128 461.8 602 50.8
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-127 460.7 598 50.5
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.5e-127 458.8 605 47.9
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-126 457.6 592 49.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.6e-125 453.0 554 50.5
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.0e-124 451.4 598 49.7
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.5e-123 447.6 597 50.3
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 9.7e-123 444.9 597 50.1
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 2.8e-122 443.4 601 46.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-122 443.0 588 49.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-121 441.4 545 49.0
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.8e-121 440.7 603 47.4
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.1e-121 439.9 602 52.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.6e-120 436.8 595 48.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.1e-118 431.4 592 48.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 3.2e-118 429.9 552 48.2
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 6.1e-117 425.6 590 46.6
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.9e-117 425.2 571 45.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.0e-116 423.3 552 48.0
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.9e-116 422.9 590 46.4
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 9.7e-115 418.3 657 45.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.2e-114 417.2 549 46.4
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.2e-114 417.2 546 44.9
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 6.3e-114 415.6 560 47.5
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.2e-114 415.2 551 46.1
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 8.2e-114 415.2 548 47.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.4e-113 414.5 604 44.9
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.8e-113 414.1 556 49.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-112 411.4 586 42.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.2e-112 411.4 537 46.0
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.6e-112 410.2 597 43.6
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.5e-112 409.8 603 45.3
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-112 409.5 599 43.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-112 409.5 599 43.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-111 407.5 606 43.1
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-111 407.5 606 43.1
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.7e-111 407.5 599 43.7
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 6.5e-111 405.6 551 46.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.2e-110 402.9 604 44.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.2e-109 401.4 607 44.3
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.1e-109 400.6 599 43.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.7e-109 400.2 607 45.1
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.0e-108 398.3 550 44.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-108 398.3 567 43.9
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.3e-108 397.1 602 43.5
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 5.2e-108 396.0 567 43.7
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 6.7e-108 395.6 547 45.9
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.5e-107 394.4 603 44.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.3e-106 391.3 603 40.8
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.3e-106 391.3 547 49.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.3e-106 391.3 584 43.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 4.8e-106 389.4 590 48.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.3e-106 389.0 586 43.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.4e-105 387.9 609 41.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 5.3e-105 386.0 552 43.1
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.0e-105 385.6 580 44.1
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.0e-104 384.0 512 48.0
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.0e-103 381.7 546 48.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-103 381.3 560 44.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.2e-102 376.3 555 41.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.2e-102 376.3 559 44.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.6e-101 374.4 602 41.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.8e-100 370.9 555 41.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 4.0e-100 369.8 600 44.0
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.0e-100 369.8 554 42.6
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.7e-100 369.0 615 40.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.5e-99 367.9 545 42.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.4e-99 366.3 605 41.0
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.5e-99 365.5 598 44.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 9.7e-99 365.2 611 40.3
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.3e-98 364.8 598 44.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.3e-98 364.8 598 44.1
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.2e-98 364.0 608 40.6
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-98 363.2 619 39.7
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 6.3e-98 362.5 620 39.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 7.0e-97 359.0 601 40.9
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 7.0e-97 359.0 596 43.5
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.5e-96 356.7 544 45.6
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.5e-95 352.4 435 51.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 8.5e-95 352.1 601 43.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 9.4e-94 348.6 602 41.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.1e-93 347.4 603 40.0
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 4.0e-92 343.2 564 38.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 8.8e-92 342.0 554 40.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 7.5e-91 339.0 553 40.0
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 3.5e-88 330.1 482 47.9
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 7.7e-88 328.9 384 51.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.5e-86 324.7 553 39.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 6.1e-85 319.3 550 38.7
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 4.0e-84 316.6 605 36.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 6.8e-84 315.8 605 36.9
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 4.4e-83 313.2 554 37.0
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.7e-82 311.2 485 42.1
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-81 308.5 605 36.2
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.4e-81 308.1 399 47.4
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.2e-81 305.4 555 38.2
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.6e-80 304.7 596 36.2
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 7.8e-80 302.4 607 35.6
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.9e-79 300.1 607 35.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.5e-78 298.1 597 34.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.1e-77 294.3 376 50.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.6e-77 293.5 594 35.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 8.9e-76 288.9 554 36.8
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.4e-75 286.6 429 44.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 3.2e-73 280.4 494 41.9
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-72 278.1 574 35.5
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.7e-72 277.3 251 63.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.5e-70 271.6 451 39.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.5e-70 268.9 544 40.8
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.1e-64 251.1 450 38.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.6e-63 246.1 254 55.9
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.1e-61 241.1 596 32.2
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-60 238.0 491 34.6
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-46 191.8 462 32.7
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.3e-46 190.7 249 46.6
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 4.3e-46 190.3 557 30.9
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-46 189.9 154 70.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.1e-45 188.0 398 33.4
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.2e-45 186.4 154 69.5
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 8.1e-45 186.0 270 44.8
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-44 185.7 268 45.1
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.6e-43 179.5 284 41.9
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 4.9e-42 176.8 164 62.2
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.4e-36 157.9 153 51.0
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.9e-34 151.0 248 37.9
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.1e-33 149.1 560 29.5
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.0e-32 143.3 147 49.0
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-30 138.7 144 53.5
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.9e-30 138.3 304 32.2
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.3e-30 137.1 234 41.5
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 6.9e-28 129.8 162 46.9
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-27 127.9 186 44.6
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.5e-27 127.1 119 56.3
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-25 121.3 104 66.3
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.1e-24 118.2 250 33.2
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 5.7e-22 110.2 446 23.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 9.6e-22 109.4 548 22.6
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.7e-21 107.5 235 32.3
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.0e-20 104.0 162 34.6
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.4e-19 100.9 144 36.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.7e-18 98.6 530 22.8
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.4e-18 96.3 84 61.9
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.5e-17 94.7 522 23.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.7e-15 86.7 67 73.1
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 6.3e-13 80.1 68 64.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.4e-12 79.0 111 38.7
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.4e-12 78.2 221 28.1
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.9e-12 76.6 111 38.7
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-11 75.5 141 34.0
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 4.5e-11 73.9 190 29.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.9e-11 73.6 138 36.2
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.7e-11 73.2 159 34.6
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-09 68.9 84 54.8
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-09 68.2 55 63.6
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.2e-09 67.8 131 33.6
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.1e-08 65.1 77 40.3
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.6e-08 64.3 112 41.1
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.4e-07 62.4 110 35.5
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 2.0e-06 58.5 61 50.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.5e-06 58.2 67 49.3
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.3e-06 57.8 525 21.3
Actinidia17466 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.4e-06 56.6 135 33.3


User provided reference genes

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