Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.7e-117 424.9 213 100.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-109 399.8 202 100.0
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.8e-109 398.3 209 96.7
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.1e-108 396.7 202 99.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-107 392.1 202 98.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.4e-78 295.4 216 73.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 5.1e-74 281.6 198 71.2
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.3e-72 276.9 172 79.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-68 263.8 176 76.1
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.3e-66 256.1 174 75.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.5e-65 252.7 183 71.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.3e-65 252.3 174 74.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 7.4e-65 251.1 190 70.0
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 3.4e-62 242.3 158 77.2
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 5.9e-62 241.5 152 78.9
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.0e-61 240.7 198 64.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.7e-61 240.0 198 64.1
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.2e-61 239.6 174 68.4
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.1e-60 237.3 249 57.0
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.4e-60 236.9 211 60.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-60 236.5 213 60.1
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.5e-60 236.1 158 72.8
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 7.2e-60 234.6 197 64.0
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 9.4e-60 234.2 200 62.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.7e-59 232.6 199 64.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.7e-59 231.9 184 65.2
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.7e-59 231.9 173 69.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.9e-59 231.1 218 59.6
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 7.9e-59 231.1 210 59.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.4e-58 230.3 169 68.0
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 8.8e-58 227.6 152 74.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.1e-57 227.3 179 66.5
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.1e-57 227.3 159 72.3
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.6e-57 226.1 169 66.9
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.3e-57 225.7 191 63.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 5.7e-57 224.9 172 68.0
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.8e-56 222.6 172 65.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 2.8e-56 222.6 169 66.9
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 8.2e-56 221.1 146 73.3
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.1e-55 220.7 175 64.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.4e-55 220.3 197 58.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.4e-55 220.3 159 69.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.4e-55 220.3 159 69.8
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.3e-55 218.4 172 66.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.1e-55 217.6 156 69.9
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 9.1e-55 217.6 169 64.5
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.6e-54 216.1 161 67.7
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 3.5e-54 215.7 172 64.5
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 3.5e-54 215.7 172 64.5
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 4.5e-54 215.3 126 81.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 5.9e-54 214.9 126 81.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.0e-53 214.2 175 65.1
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.7e-53 213.4 194 62.4
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.8e-53 212.2 156 69.9
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.2e-52 209.1 162 66.0
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 5.5e-52 208.4 161 67.1
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 9.4e-52 207.6 174 60.3
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 9.4e-52 207.6 161 68.3
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.2e-51 207.2 161 67.7
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.1e-51 206.5 157 66.9
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.3e-50 203.0 158 67.1
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 3.0e-50 202.6 157 66.9
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 4.0e-50 202.2 177 61.6
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 5.2e-50 201.8 156 68.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 5.2e-50 201.8 162 66.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 8.8e-50 201.1 177 61.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 8.8e-50 201.1 177 61.0
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 8.8e-50 201.1 177 61.0
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 8.8e-50 201.1 177 61.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.1e-49 200.7 178 59.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.5e-49 200.3 211 53.1
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.0e-49 199.9 177 59.9
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.6e-49 199.5 160 61.9
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 4.4e-49 198.7 177 61.0
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.4e-49 198.7 170 62.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.4e-49 198.7 177 60.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 7.5e-49 198.0 184 57.1
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 7.5e-49 198.0 166 64.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.7e-48 196.8 190 55.8
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.7e-48 196.8 177 59.3
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.2e-48 196.4 174 60.3
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.8e-48 195.3 172 63.4
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 6.3e-48 194.9 162 63.0
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.2e-48 194.5 171 59.6
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.1e-47 194.1 173 61.8
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-47 194.1 162 63.0
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 3.1e-47 192.6 171 61.4
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 7.0e-47 191.4 150 66.0
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 3.8e-45 185.7 121 76.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 6.5e-45 184.9 177 54.2
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.5e-44 183.7 166 58.4
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.2e-44 182.2 155 66.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 9.4e-44 181.0 159 62.3
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.2e-43 180.6 213 47.4
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.1e-43 179.9 203 50.2
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.1e-43 178.3 163 58.3
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.4e-42 177.2 163 57.1
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.4e-42 177.2 163 57.1
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.5e-41 173.7 203 53.7
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.5e-41 173.7 178 52.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 4.4e-41 172.2 159 60.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.7e-41 171.8 162 56.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 9.8e-41 171.0 155 54.8
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.2e-40 169.9 167 53.9
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.8e-40 169.5 162 55.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.0e-37 161.0 147 59.9
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.0e-37 161.0 129 63.6
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 7.2e-36 154.8 145 58.6
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.6e-35 153.7 110 70.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 2.7e-35 152.9 121 64.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 5.7e-33 145.2 136 57.4
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.4e-31 140.6 102 65.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 4.1e-31 139.0 104 66.3
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.1e-27 126.7 103 61.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 3.6e-27 125.9 131 58.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.0e-27 124.8 95 65.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.5e-25 118.2 80 67.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 8.3e-24 114.8 104 59.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 6.8e-18 95.1 88 56.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 2.0e-14 83.6 69 58.0
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.7e-11 72.4 101 46.5
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.8e-10 70.5 121 36.4
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.8e-10 70.5 46 69.6
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 2.3e-10 70.1 120 35.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 8.3e-08 61.6 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 8.3e-08 61.6 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-07 61.2 63 46.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 4.1e-07 59.3 149 33.6
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 4.1e-07 59.3 63 44.4
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 6.0e-06 55.5 139 31.7


User provided reference genes

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