Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.6e-132 474.2 223 100.0
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-92 342.8 165 94.5
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-92 342.8 165 94.5
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 9.8e-84 313.9 165 83.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.8e-82 309.7 164 87.2
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.4e-82 308.1 165 82.4
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.0e-82 307.8 165 80.0
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 9.1e-82 307.4 165 79.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 79.4
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 79.4
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 79.4
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 79.4
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 78.8
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.0e-81 306.2 165 81.2
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.7e-81 305.8 177 79.7
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.5e-81 305.4 165 80.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.5e-81 305.1 165 80.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 7.7e-81 304.3 164 80.5
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.0e-80 303.9 163 80.4
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.0e-80 303.9 165 80.6
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.3e-80 303.5 164 80.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 2.2e-80 302.8 165 78.8
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.9e-80 302.4 165 79.4
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.9e-80 302.4 164 79.9
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.8e-80 302.0 165 78.2
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.5e-80 301.2 165 84.8
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 8.5e-80 300.8 165 80.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.5e-79 300.1 163 78.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.5e-79 300.1 164 80.5
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.9e-79 299.7 165 79.4
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.9e-79 299.7 165 78.2
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.9e-79 299.7 165 77.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 2.5e-79 299.3 165 77.6
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.5e-79 299.3 165 77.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 3.2e-79 298.9 164 79.3
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.2e-79 298.9 165 78.2
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.2e-79 298.5 150 93.3
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.5e-79 298.1 165 76.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 7.2e-79 297.7 165 77.6
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.6e-78 296.6 184 70.1
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 2.7e-78 295.8 164 78.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.7e-78 295.8 165 77.0
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 3.6e-78 295.4 165 75.8
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 3.6e-78 295.4 165 78.8
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 6.1e-78 294.7 165 77.6
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 6.1e-78 294.7 169 74.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 8.0e-78 294.3 165 75.2
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 8.0e-78 294.3 165 77.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.0e-77 293.9 165 75.8
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.0e-77 293.9 165 76.4
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.8e-77 293.1 165 74.5
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.8e-77 293.1 165 75.2
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.3e-77 292.7 165 75.8
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.3e-77 292.7 165 75.8
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.2e-77 291.6 164 75.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 5.2e-77 291.6 164 75.6
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.2e-77 291.6 183 70.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 5.2e-77 291.6 165 75.8
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 6.8e-77 291.2 163 76.1
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 8.8e-77 290.8 164 75.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 8.8e-77 290.8 165 73.3
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.5e-76 290.0 165 74.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.0e-76 289.7 165 75.8
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.0e-76 289.7 163 76.1
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 2.6e-76 289.3 165 75.8
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 2.6e-76 289.3 165 75.8
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.4e-76 288.9 173 72.3
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 4.4e-76 288.5 165 71.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 5.7e-76 288.1 164 75.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 5.7e-76 288.1 165 73.3
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 7.5e-76 287.7 165 74.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.3e-75 287.0 164 75.6
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.3e-75 287.0 165 73.3
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.2e-75 286.2 164 73.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.2e-75 286.2 164 75.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 2.2e-75 286.2 165 73.3
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 2.2e-75 286.2 165 73.9
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 2.8e-75 285.8 165 75.2
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.8e-75 285.8 165 75.8
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.8e-75 285.8 167 70.7
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 2.8e-75 285.8 164 76.8
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.8e-75 285.8 165 73.3
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.7e-75 285.4 163 74.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.9e-75 285.0 165 71.5
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 6.3e-75 284.6 165 75.2
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 6.3e-75 284.6 165 72.7
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 8.3e-75 284.3 164 72.6
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-74 283.9 164 72.6
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.4e-74 283.5 163 73.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.4e-74 283.5 164 72.6
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.8e-74 283.1 164 73.2
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 3.1e-74 282.3 164 73.8
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 4.1e-74 282.0 164 72.0
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.1e-74 282.0 164 72.0
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 4.1e-74 282.0 164 72.0
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 5.4e-74 281.6 164 72.0
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.4e-74 281.6 148 86.5
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 9.2e-74 280.8 165 72.7
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 3.5e-73 278.9 165 72.1
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 7.7e-73 277.7 165 69.7
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 7.7e-73 277.7 163 68.1
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.3e-72 276.9 162 72.8
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 2.3e-72 276.2 164 70.1
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.9e-72 275.8 164 70.7
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.3e-71 272.3 163 69.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.3e-71 272.3 163 69.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.6e-71 271.6 162 70.4
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.6e-71 271.6 178 68.0
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 9.5e-71 270.8 174 70.7
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.1e-70 269.6 165 68.5
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.8e-69 266.5 162 69.1
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.6e-68 262.7 165 70.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.7e-67 260.0 149 73.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.7e-67 260.0 168 64.9
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.9e-67 258.5 173 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 8.3e-67 257.7 164 68.9
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-66 256.1 149 71.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.2e-65 253.8 162 63.6
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.3e-64 250.4 172 70.9
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.5e-63 246.9 253 47.8
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 5.6e-63 245.0 162 64.2
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 5.2e-61 238.4 162 64.2
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.2e-60 237.3 165 64.8
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.2e-59 233.0 165 63.6
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.2e-59 233.0 134 73.9
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 4.1e-58 228.8 163 64.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.1e-46 189.9 158 55.7
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 6.8e-45 184.9 119 71.4
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 5.1e-40 168.7 92 77.2
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 8.1e-38 161.4 143 51.0
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 8.9e-37 157.9 160 45.6
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 9.9e-36 154.5 174 43.7
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.8e-33 144.8 104 61.5
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 3.9e-32 142.5 80 75.0
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 6.0e-25 118.6 65 78.5
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.5e-23 114.0 228 32.9
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.0e-20 103.6 165 37.6
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.2e-18 96.3 57 75.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 9.6e-15 84.7 44 77.3
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.3e-14 84.3 66 56.1
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.8e-14 83.2 43 79.1
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.1e-13 81.3 47 74.5


User provided reference genes

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