Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-82 309.7 148 100.0
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.8e-76 288.1 148 93.2
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 6.7e-73 277.3 147 87.8
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.4e-70 268.9 157 82.8
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.6e-69 265.4 166 78.3
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.7e-68 262.7 146 86.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.9e-67 259.2 148 85.1
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.4e-67 256.9 151 82.1
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.6e-66 256.1 144 84.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-66 255.0 145 86.2
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-66 255.0 145 86.2
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 4.7e-66 254.6 144 85.4
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 6.1e-66 254.2 150 81.3
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 2.3e-65 252.3 148 80.4
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 3.9e-65 251.5 148 83.1
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 8.8e-65 250.4 150 80.7
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.1e-64 250.0 153 79.7
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.1e-64 250.0 145 85.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.0e-64 249.2 148 82.4
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 2.0e-64 249.2 150 79.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 2.0e-64 249.2 150 79.3
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.7e-64 247.7 139 84.2
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.3e-63 246.5 150 80.0
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.3e-63 246.5 150 80.0
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.7e-63 246.1 148 78.4
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.2e-63 245.7 149 79.9
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.8e-63 245.4 151 79.5
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 3.7e-63 245.0 139 81.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 4.8e-63 244.6 146 81.5
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.3e-63 244.2 144 81.2
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 8.2e-63 243.8 145 80.7
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 8.2e-63 243.8 145 80.7
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.1e-62 243.4 145 80.0
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.4e-62 243.0 148 79.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.4e-62 243.0 148 79.1
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 150 78.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 148 78.4
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.8e-62 242.7 151 78.8
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 2.4e-62 242.3 139 82.0
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.4e-62 242.3 146 81.5
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.4e-62 242.3 132 87.1
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.1e-62 241.9 147 78.9
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 4.1e-62 241.5 151 76.8
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 4.1e-62 241.5 151 79.5
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.3e-62 241.1 148 77.7
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 7.0e-62 240.7 148 77.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 9.1e-62 240.4 147 80.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 9.1e-62 240.4 144 80.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.2e-61 240.0 145 80.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.2e-61 240.0 144 80.6
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.6e-61 239.6 144 81.2
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.6e-61 239.6 145 80.0
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.6e-61 239.6 148 78.4
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.6e-61 239.6 144 80.6
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 79.5
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 3.5e-61 238.4 146 79.5
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.5e-61 238.4 150 77.3
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 4.5e-61 238.0 144 80.6
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.0e-60 236.9 146 77.4
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.3e-60 236.5 137 80.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.3e-60 236.5 136 80.1
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.7e-60 236.1 154 77.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.7e-60 236.1 149 75.8
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.2e-60 235.7 131 83.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.2e-60 235.7 157 74.5
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.9e-60 235.3 145 77.2
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 5.0e-60 234.6 143 78.3
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.5e-60 234.2 145 77.9
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 75.7
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.1e-59 233.4 144 76.4
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 77.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.5e-59 233.0 148 75.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.5e-59 233.0 149 75.8
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.5e-59 233.0 145 75.9
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.9e-59 232.6 148 75.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.9e-59 232.6 148 75.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.9e-59 232.6 146 76.7
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.9e-59 232.6 148 77.0
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.5e-59 232.3 122 85.2
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.5e-59 231.1 145 77.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 73.0
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.1e-58 229.2 148 75.7
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.1e-58 229.2 148 75.7
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 2.7e-58 228.8 148 75.0
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.7e-58 228.8 149 73.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 3.6e-58 228.4 135 80.0
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.8e-57 226.1 137 78.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 4.0e-57 224.9 149 72.5
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 8.8e-57 223.8 129 80.6
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.5e-56 223.0 120 82.5
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-56 223.0 139 77.0
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-56 223.0 139 77.0
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-56 222.6 139 77.0
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 7.5e-56 220.7 130 77.7
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 9.7e-56 220.3 135 77.8
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 2.2e-55 219.2 117 82.9
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 2.2e-55 219.2 135 79.3
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 4.8e-55 218.0 133 76.7
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 4.8e-55 218.0 119 81.5
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.2e-55 217.2 155 73.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.8e-54 216.1 151 68.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.8e-54 216.1 151 68.2
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.4e-54 215.7 150 72.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.0e-53 212.6 159 71.7
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.5e-53 211.8 130 76.2
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.2e-52 209.1 112 82.1
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.9e-52 208.8 116 82.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 8.5e-52 207.2 116 81.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.9e-51 206.1 116 79.3
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.5e-51 205.7 174 62.6
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.5e-51 205.7 111 82.0
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 3.2e-51 205.3 152 71.1
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.4e-49 199.9 147 64.6
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.8e-49 199.5 105 85.7
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.0e-49 198.7 114 78.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.5e-48 196.4 118 71.2
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.8e-47 192.2 104 80.8
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 6.3e-47 191.0 126 67.5
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 8.3e-47 190.7 104 79.8
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.4e-46 189.9 143 66.4
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.5e-43 177.9 110 79.1
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.2e-42 176.8 112 73.2
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.2e-42 176.8 91 81.3
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 3.0e-41 172.2 113 73.5
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 7.5e-40 167.5 150 62.7
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.4e-38 163.3 80 91.2
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.1e-38 162.2 116 72.4
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.0e-36 157.1 99 81.8
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 5.0e-36 154.8 78 84.6
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.1e-27 127.1 153 47.1
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.6e-27 124.8 104 58.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 1.1e-25 120.6 61 83.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.0e-25 118.6 85 72.9
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.1e-22 110.5 311 29.3
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.1e-22 110.5 76 77.6
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.7e-20 103.2 62 69.4
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 4.3e-19 98.6 52 84.6
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 2.6e-16 89.4 54 79.6
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.9e-15 85.9 52 71.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.5e-11 73.6 38 92.1
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.6e-11 71.6 49 69.4
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-10 69.7 40 72.5
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 2.4e-09 66.2 47 72.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 3.1e-09 65.9 42 71.4
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.2e-07 59.7 30 76.7
Dinv35020 Davidia involucrata HOM05D005035 ORTHO05D006141 9.2e-06 54.3 45 64.4


User provided reference genes

Program Settings