Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.9e-152 543.5 492 100.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 6.2e-78 296.6 270 59.6
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 6.6e-64 250.0 228 61.0
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.0e-60 238.4 234 56.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.6e-57 228.8 210 54.3
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 2.6e-52 211.5 253 46.2
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 4.4e-52 210.7 260 46.5
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 9.3e-50 203.0 238 48.7
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.7e-48 198.7 234 48.3
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 5.8e-44 183.7 248 46.8
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.3e-43 182.6 174 55.2
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.9e-43 181.4 163 55.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 8.4e-43 179.9 217 47.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 3.2e-42 177.9 175 53.7
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 5.5e-42 177.2 193 49.2
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.6e-41 174.1 262 42.7
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 8.7e-40 169.9 229 45.9
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.1e-39 169.5 211 46.4
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 7.4e-39 166.8 250 41.2
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 7.4e-39 166.8 208 45.2
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.7e-38 164.5 187 48.7
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.1e-37 162.9 244 40.6
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.1e-37 162.9 144 55.6
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 9.0e-37 159.8 188 48.9
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.5e-36 159.1 283 36.7
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 2.0e-36 158.7 182 42.9
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 4.5e-36 157.5 253 40.3
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 7.6e-36 156.8 173 46.8
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.7e-35 155.6 218 39.0
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.9e-35 154.8 146 51.4
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 3.8e-35 154.5 257 40.9
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.9e-35 154.1 173 46.2
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 1.1e-34 152.9 248 39.9
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 5.5e-34 150.6 196 46.4
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 1.6e-33 149.1 214 43.0
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.1e-33 148.7 134 54.5
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 1.8e-32 145.6 128 50.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 3.9e-32 144.4 143 51.0
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.9e-31 142.1 254 39.4
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.9e-31 142.1 145 49.7
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 3.3e-31 141.4 199 43.2
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 3.3e-31 141.4 198 43.4
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.3e-30 139.4 119 54.6
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.1e-30 138.7 175 42.3
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 2.1e-30 138.7 118 58.5
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 3.7e-30 137.9 167 44.3
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.7e-30 137.9 183 44.8
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 3.7e-30 137.9 235 37.9
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.5e-28 132.5 132 48.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 4.5e-28 131.0 126 46.8
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.6e-28 130.2 166 39.8
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.0e-27 129.8 183 41.0
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.7e-27 129.0 164 41.5
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.2e-27 128.6 205 40.0
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.2e-27 128.6 188 42.6
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 1.9e-26 125.6 157 40.8
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.9e-26 125.6 217 37.3
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.5e-26 125.2 205 37.1
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 2.5e-26 125.2 191 38.2
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 9.3e-26 123.2 166 37.3
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.7e-25 121.7 144 45.8
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 4.6e-25 120.9 195 39.5
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.1e-25 120.6 232 37.1
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 7.9e-25 120.2 208 34.6
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 1.0e-24 119.8 173 38.7
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.0e-24 119.8 182 38.5
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.3e-24 119.4 157 40.8
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 1.8e-24 119.0 155 41.3
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.8e-24 119.0 155 41.3
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.3e-24 118.6 118 51.7
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 6.7e-24 117.1 110 50.0
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.1e-23 116.3 203 35.0
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.9e-23 115.5 227 30.4
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.9e-23 115.5 216 33.3
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.9e-23 115.5 160 40.6
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.5e-23 115.2 187 36.4
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 4.3e-23 114.4 158 39.9
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 4.3e-23 114.4 139 41.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 7.4e-23 113.6 131 44.3
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 9.7e-23 113.2 203 34.5
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 9.7e-23 113.2 133 43.6
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.6e-22 112.5 206 34.5
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.2e-22 112.1 110 51.8
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.8e-22 111.7 133 42.9
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 6.3e-22 110.5 208 35.1
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.4e-21 108.6 249 33.7
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.4e-21 108.6 249 33.7
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.4e-21 108.6 218 31.2
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.4e-21 108.6 218 31.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 4.1e-21 107.8 165 35.2
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.2e-20 106.3 140 41.4
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.5e-20 105.9 168 39.3
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.4e-20 104.8 183 36.1
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 3.4e-20 104.8 183 38.3
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 3.2e-18 98.2 244 32.8
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 7.2e-18 97.1 132 37.1
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.1e-17 95.5 99 51.5
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.6e-17 94.4 209 31.1
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 1.0e-16 93.2 118 42.4
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.3e-16 92.0 223 32.7
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 3.0e-16 91.7 121 43.8
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.8e-13 82.4 123 41.5
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.5e-12 79.3 196 34.2
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.0e-12 79.0 252 28.2
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.5e-12 77.8 239 27.2
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 1.0e-08 66.6 160 31.2
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.3e-08 65.5 179 31.8
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 2.3e-08 65.5 199 28.6
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 3.9e-08 64.7 184 27.2
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 5.1e-08 64.3 162 26.5
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 6.7e-08 63.9 153 26.8
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 6.7e-08 63.9 152 30.3
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 6.7e-08 63.9 163 27.6
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 8.8e-08 63.5 167 23.4
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 1.1e-07 63.2 201 27.9
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.5e-07 62.8 172 29.1
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 1.5e-07 62.8 219 28.8
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 2.6e-07 62.0 177 28.2
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 4.4e-07 61.2 205 25.4
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 5.7e-07 60.8 151 27.2
Duzib235G0794 Durio zibethinus HOM05D000424 ORTHO05D000355 5.7e-07 60.8 149 31.5
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 1.3e-06 59.7 167 25.7
SGA_v2.0_scaffold4G02164 Striga asiatica HOM05D007496 ORTHO05D009479 1.3e-06 59.7 155 27.7
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 1.7e-06 59.3 163 27.0
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.7e-06 59.3 183 28.4
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-06 58.9 167 25.7
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 2.8e-06 58.5 182 25.3
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 2.8e-06 58.5 234 26.9
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 3.7e-06 58.2 208 23.1
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 3.7e-06 58.2 197 25.4
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 3.7e-06 58.2 159 26.4
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 4.8e-06 57.8 136 27.2
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 4.8e-06 57.8 205 26.3
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 4.8e-06 57.8 132 31.8
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 6.3e-06 57.4 182 24.7
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 6.3e-06 57.4 136 31.6
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 8.2e-06 57.0 182 24.7
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 8.2e-06 57.0 132 31.1
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 8.2e-06 57.0 175 24.0
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 8.2e-06 57.0 227 26.4


User provided reference genes

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