Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.3e-178 628.2 317 100.0
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.5e-166 587.4 317 93.4
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.3e-145 517.7 299 88.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.7e-143 510.8 299 87.0
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 7.0e-136 487.6 302 80.8
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 7.0e-136 487.6 299 81.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.2e-135 486.9 299 81.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 5.0e-134 481.5 299 80.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.1e-133 480.3 299 81.6
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.9e-133 479.6 299 80.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.3e-133 478.8 299 80.3
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 9.5e-133 477.2 299 80.3
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.2e-132 476.9 299 79.9
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.6e-132 476.5 319 76.2
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.8e-132 475.7 299 79.6
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.6e-132 475.3 299 80.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 4.7e-132 474.9 299 79.6
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.1e-132 474.6 299 79.6
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.0e-131 473.8 299 79.6
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.0e-131 473.8 319 75.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.4e-131 473.4 319 75.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.3e-131 472.6 299 79.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 5.2e-131 471.5 299 78.9
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 5.2e-131 471.5 299 78.9
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 6.8e-131 471.1 299 79.3
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.4e-130 468.8 299 78.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 4.4e-130 468.4 299 78.3
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 4.4e-130 468.4 299 79.6
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 5.7e-130 468.0 299 78.9
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.7e-130 468.0 299 77.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.7e-130 468.0 299 78.6
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.7e-129 466.5 301 79.7
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.2e-129 466.1 299 78.9
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.9e-129 465.7 297 78.8
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.9e-129 465.7 299 77.6
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.9e-129 465.7 299 77.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.7e-129 465.3 299 77.9
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 6.4e-129 464.5 299 79.3
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 6.4e-129 464.5 297 79.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 8.3e-129 464.2 297 78.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 8.3e-129 464.2 299 78.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.1e-128 463.8 299 77.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.4e-128 463.4 299 78.3
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.8e-128 463.0 299 77.9
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.4e-128 462.6 299 77.3
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.4e-128 462.6 299 76.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.4e-128 461.5 296 77.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.2e-127 460.3 299 77.6
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.2e-127 460.3 297 78.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.0e-127 459.5 299 76.9
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.0e-127 459.5 299 77.3
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.0e-127 459.5 299 77.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 3.5e-127 458.8 299 76.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.5e-127 458.8 299 78.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-126 456.8 289 78.9
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.3e-126 456.8 290 79.3
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.3e-126 456.1 290 79.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.3e-126 456.1 299 77.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.0e-126 455.7 299 77.3
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 5.0e-126 454.9 297 77.4
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.6e-126 454.5 299 76.3
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 6.6e-126 454.5 289 78.5
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 6.6e-126 454.5 299 75.9
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.5e-125 453.4 297 76.1
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.5e-125 453.4 299 76.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.5e-125 452.6 297 76.8
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.5e-125 452.6 289 78.9
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.5e-125 452.6 297 77.4
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 4.3e-125 451.8 322 71.7
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 5.6e-125 451.4 290 77.6
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-124 449.9 295 76.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.8e-124 449.1 297 75.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.8e-124 449.1 289 77.9
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.8e-124 449.1 297 76.4
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.8e-124 449.1 297 75.8
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.8e-124 449.1 289 78.9
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.8e-124 449.1 302 73.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 4.7e-124 448.4 289 77.5
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 8.0e-124 447.6 299 74.9
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.0e-123 447.2 297 76.1
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.4e-123 446.8 299 75.9
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.8e-123 446.4 315 72.4
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-123 446.4 299 75.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.8e-123 446.4 299 74.2
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.3e-123 446.0 299 75.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.1e-123 445.7 289 77.2
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 8.9e-123 444.1 299 75.3
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-122 443.7 291 77.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.5e-122 443.4 297 76.4
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.5e-122 443.4 291 76.6
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 2.0e-122 443.0 299 73.6
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.8e-122 441.4 299 74.9
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 9.8e-122 440.7 290 76.2
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 9.8e-122 440.7 290 76.2
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 9.8e-122 440.7 299 73.6
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.3e-121 440.3 289 75.4
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.7e-121 439.9 323 69.3
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-121 439.9 299 74.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.7e-121 439.9 299 73.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.2e-121 439.5 299 73.9
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.9e-121 439.1 302 72.8
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.7e-121 438.7 289 75.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 6.4e-121 438.0 299 73.2
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 8.3e-121 437.6 297 73.7
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 8.3e-121 437.6 289 75.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.9e-120 436.4 299 74.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.4e-120 434.9 289 75.8
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.7e-119 432.6 289 74.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.5e-119 432.2 299 71.9
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.5e-119 432.2 292 75.7
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.0e-118 430.6 289 75.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.7e-118 429.9 289 75.4
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.9e-118 428.7 289 74.7
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.9e-118 428.7 289 74.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 5.0e-118 428.3 289 74.7
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 6.6e-118 427.9 296 70.9
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.5e-117 426.8 290 74.1
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.3e-117 425.2 343 64.7
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 8.3e-113 411.0 297 70.4
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.2e-112 409.1 300 69.7
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.4e-112 408.3 312 69.6
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.6e-110 401.0 286 72.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.1e-108 396.4 257 77.8
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 4.7e-108 395.2 299 65.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 8.1e-108 394.4 297 67.0
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.1e-91 339.3 230 75.2
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.3e-89 334.0 297 58.9
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.1e-84 316.6 303 55.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 5.5e-80 302.0 297 54.9
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.6e-79 300.4 278 56.1
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.7e-76 289.3 191 76.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.7e-70 268.5 191 72.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.2e-64 249.2 302 43.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.2e-63 247.7 168 74.4
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.5e-56 222.2 301 40.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-54 217.2 304 39.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 3.2e-48 196.4 140 72.1
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-42 177.2 122 72.1
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.5e-42 176.0 186 54.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.7e-39 166.8 110 72.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 6.1e-31 139.0 90 74.4
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.9e-25 120.2 77 71.4
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.9e-25 120.2 77 71.4
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.9e-25 120.2 77 71.4
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 8.6e-25 118.6 77 71.4
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-24 117.9 77 71.4
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 3.2e-24 116.7 77 70.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.6e-23 114.4 74 70.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.4e-21 106.7 274 33.2
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.6e-18 97.8 62 72.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.6e-18 97.8 62 72.6
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 3.5e-18 96.7 62 71.0
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 5.6e-16 89.4 73 61.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.2e-12 77.4 51 74.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.1e-11 73.2 40 87.5


User provided reference genes

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