Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.8e-33 144.4 62 100.0
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.5e-23 110.9 66 75.8
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.0e-22 107.1 70 74.3
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-12 75.9 60 61.7
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 6.2e-12 73.6 49 69.4
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.4e-11 72.4 49 67.3
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.8e-11 72.0 49 67.3
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.8e-11 72.0 49 67.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-11 72.0 49 67.3
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.3e-11 71.6 49 67.3
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 3.1e-11 71.2 49 67.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.0e-11 70.9 49 65.3
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 4.0e-11 70.9 49 67.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 4.0e-11 70.9 49 65.3
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 65.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 67.3
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 67.3
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 67.3
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.2e-11 70.5 51 66.7
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 67.3
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 67.3
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 65.3
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 65.3
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 65.3
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.2e-11 70.5 49 65.3
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 6.8e-11 70.1 49 65.3
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 6.8e-11 70.1 49 65.3
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 8.9e-11 69.7 49 65.3
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 65.3
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 63.3
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 63.3
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 63.3
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 63.3
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 65.3
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.2e-10 69.3 49 63.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.5e-10 68.9 49 63.3
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.5e-10 68.9 49 63.3
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.5e-10 68.9 49 65.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.5e-10 68.9 49 65.3
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 65.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.0e-10 68.6 49 63.3
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-10 68.2 49 63.3
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.6e-10 68.2 49 63.3
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.6e-10 68.2 49 63.3
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 3.4e-10 67.8 48 60.4
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.4e-10 67.8 49 63.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 4.4e-10 67.4 49 63.3
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 4.4e-10 67.4 49 61.2
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 5.8e-10 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 5.8e-10 67.0 43 72.1
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 7.5e-10 66.6 49 61.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 9.8e-10 66.2 49 61.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 9.8e-10 66.2 44 68.2
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 9.8e-10 66.2 49 61.2
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 9.8e-10 66.2 49 59.2
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.3e-09 65.9 49 61.2
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.7e-09 65.5 49 61.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.7e-09 65.5 49 61.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.2e-09 65.1 49 59.2
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.9e-09 64.7 49 59.2
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.9e-09 64.7 47 61.7
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.9e-09 64.7 49 61.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.7e-09 64.3 44 65.9
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.7e-09 64.3 44 65.9
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.7e-09 64.3 49 59.2
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 4.9e-09 63.9 44 65.9
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 8.3e-09 63.2 44 65.9
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.1e-08 62.8 49 59.2
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.4e-08 62.4 44 63.6
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.9e-08 62.0 49 55.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 3.2e-08 61.2 44 61.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.1e-08 60.8 49 55.1
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.4e-08 60.5 49 55.1
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 7.1e-08 60.1 50 46.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.6e-07 58.9 29 75.9
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 6.0e-07 57.0 29 72.4
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.3e-06 55.1 29 69.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.1e-06 53.9 30 70.0


User provided reference genes

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