Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048442 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 5.6e-77 290.8 140 100.0
CSS0046983 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 3.6e-76 288.1 140 99.3
CSS0005618 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 2.5e-29 132.5 65 95.4
CSS0001204 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 6.2e-28 127.9 63 95.2
CSS0021224 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 1.5e-26 123.2 62 93.5
Hma1.2p1_0344F.1_g131080 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 1.1e-21 107.1 66 75.8
Gohir.D01G150200 Gossypium hirsutum HOM05D001366 ORTHO05D003220 2.1e-20 102.8 62 75.8
Gorai.002G186200 Gossypium raimondii HOM05D001366 ORTHO05D003220 2.1e-20 102.8 62 75.8
Dinv15253 Davidia involucrata HOM05D001366 ORTHO05D003220 4.8e-20 101.7 62 77.4
Gohir.A01G159950 Gossypium hirsutum HOM05D001366 ORTHO05D003220 4.8e-20 101.7 62 75.8
Rhsim12G0042000 Rhododendron simsii HOM05D001366 ORTHO05D003220 4.8e-20 101.7 62 79.0
Hma1.2p1_0223F.1_g094185 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 6.2e-20 101.3 62 75.8
Haze_12225 Corylus avellana HOM05D001366 ORTHO05D003220 8.1e-20 100.9 62 75.8
QL03p058693 Quercus lobata HOM05D001366 ORTHO05D003220 8.1e-20 100.9 62 75.8
vmacro01143 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 8.1e-20 100.9 62 77.4
Cfa009191 Carpinus fangiana HOM05D001366 ORTHO05D003220 1.1e-19 100.5 62 74.2
Sabra10G0023900 Salix brachista HOM05D001366 ORTHO05D003220 1.1e-19 100.5 62 74.2
Thecc.02G256300 Theobroma cacao HOM05D001366 ORTHO05D003220 1.4e-19 100.1 62 75.8
Dinv24813 Davidia involucrata HOM05D001366 ORTHO05D003220 1.8e-19 99.8 62 74.2
Peaxi162Scf00515g00133 Petunia axillaris HOM05D001366 ORTHO05D003220 1.8e-19 99.8 67 73.1
Rhsim12G0113000 Rhododendron simsii HOM05D001366 ORTHO05D003220 2.4e-19 99.4 62 77.4
TWI75G1447 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 3.1e-19 99.0 62 74.2
SalBow2G1604 Salvia bowleyana HOM05D001366 ORTHO05D003220 4.0e-19 98.6 62 72.6
Gohir.A12G144400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 5.3e-19 98.2 62 74.2
Potri.008G188150 Populus trichocarpa HOM05D001366 ORTHO05D003220 5.3e-19 98.2 62 72.6
MBI16_g14597_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 6.9e-19 97.8 62 72.6
Actinidia15071 Actinidia chinensis HOM05D001366 ORTHO05D003220 9.0e-19 97.4 62 74.2
Actinidia37409 Actinidia chinensis HOM05D001366 ORTHO05D016428 9.0e-19 97.4 62 74.2
CiPaw.05G184800 Carya illinoinensis HOM05D001366 ORTHO05D003220 9.0e-19 97.4 62 74.2
TWI18G0188 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 9.0e-19 97.4 62 74.2
Duzib268G0758 Durio zibethinus HOM05D001366 ORTHO05D003220 1.2e-18 97.1 62 72.6
COL.COLO4_24234 Corchorus olitorius HOM05D001366 ORTHO05D003220 1.5e-18 96.7 62 71.0
Nn4g22680 Nelumbo nucifera HOM05D001366 ORTHO05D003220 1.5e-18 96.7 62 72.6
Gohir.D12G149000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 2.0e-18 96.3 62 72.6
Gorai.008G160400 Gossypium raimondii HOM05D001366 ORTHO05D003220 2.0e-18 96.3 62 72.6
Potri.010G044100 Populus trichocarpa HOM05D001366 ORTHO05D003220 2.0e-18 96.3 62 69.4
GSVIVG01013806001 Vitis vinifera HOM05D001366 ORTHO05D003220 2.0e-18 96.3 62 72.6
Cpa.g.sc69.90 Carica papaya HOM05D001366 ORTHO05D003220 3.4e-18 95.5 62 72.6
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 3.4e-18 95.5 62 71.0
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 4.5e-18 95.1 62 72.6
Atru.chr11.2087 Acer truncatum HOM05D001366 ORTHO05D003220 5.8e-18 94.7 62 75.8
HanXRQChr12g0371851 Helianthus annuus HOM05D001366 ORTHO05D003220 5.8e-18 94.7 62 75.8
MSTRG.577 Avicennia marina HOM05D001366 ORTHO05D003220 7.6e-18 94.4 62 67.7
RcHm_v2.0_Chr4g0433251 Rosa chinensis HOM05D001366 ORTHO05D003220 7.6e-18 94.4 62 71.0
PGSC0003DMG400007677 Solanum tuberosum HOM05D001366 ORTHO05D003220 7.6e-18 94.4 62 74.2
CAN.G447.9 Capsicum annuum HOM05D001366 ORTHO05D003220 1.0e-17 94.0 67 71.6
DCAR_007067 Daucus carota HOM05D001366 ORTHO05D003220 1.0e-17 94.0 62 71.0
Prupe.1G248900 Prunus persica HOM05D001366 ORTHO05D003220 1.0e-17 94.0 62 72.6
Solyc05g005020.4 Solanum lycopersicum HOM05D001366 ORTHO05D003220 1.3e-17 93.6 62 74.2
Sopen05g001030 Solanum pennellii HOM05D001366 ORTHO05D003220 1.3e-17 93.6 62 74.2
FvH4_4g25800 Fragaria vesca HOM05D001366 ORTHO05D003220 1.7e-17 93.2 62 69.4
FAN07G2766 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.7e-17 93.2 62 69.4
FAN12G2701 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.7e-17 93.2 62 69.4
FAN12G3618 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.7e-17 93.2 62 69.4
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 1.7e-17 93.2 68 70.6
Sabra08G0142500 Salix brachista HOM05D001366 ORTHO05D003220 1.7e-17 93.2 62 69.4
TAR622G0036 Trochodendron aralioides HOM05D001366 ORTHO05D003220 2.2e-17 92.8 63 71.4
Migut.L01476 Erythranthe guttata HOM05D001366 ORTHO05D003220 2.9e-17 92.4 62 71.0
THA.LOC104823655 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 2.9e-17 92.4 62 72.6
Cc11_g15490 Coffea canephora HOM05D001366 ORTHO05D003220 4.9e-17 91.7 62 69.4
PSO832G0819 Papaver somniferum HOM05D001366 ORTHO05D003220 4.9e-17 91.7 62 67.7
BcaC07g38588 Brassica carinata HOM05D001366 ORTHO05D003220 6.5e-17 91.3 62 69.4
C08p13950 Brassica napus HOM05D001366 ORTHO05D003220 6.5e-17 91.3 62 69.4
BolC8t49029H Brassica oleracea HOM05D001366 ORTHO05D003220 6.5e-17 91.3 62 69.4
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 6.5e-17 91.3 62 69.4
MD16G1097800 Malus domestica HOM05D001366 ORTHO05D003220 6.5e-17 91.3 62 67.7
vmacro16213 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 6.5e-17 91.3 68 69.1
BraA08t35295Z Brassica rapa HOM05D001366 ORTHO05D003220 8.4e-17 90.9 62 69.4
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 8.4e-17 90.9 62 64.5
Aa31LG1G4070 Aethionema arabicum HOM05D001366 ORTHO05D003220 1.4e-16 90.1 62 69.4
FAN22G0388 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.4e-16 90.1 62 66.1
Manes.13G026800 Manihot esculenta HOM05D001366 ORTHO05D003220 1.4e-16 90.1 62 69.4
PSO063G5092 Papaver somniferum HOM05D001366 ORTHO05D003220 1.4e-16 90.1 62 66.1
AL1G21690 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 1.9e-16 89.7 62 69.4
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 1.9e-16 89.7 62 67.7
Lsat_1_v5_gn_8_153980 Lactuca sativa HOM05D001366 ORTHO05D003220 1.9e-16 89.7 62 67.7
BcaC07g38627 Brassica carinata HOM05D001366 ORTHO05D003220 2.5e-16 89.4 62 67.7
A08p33790 Brassica napus HOM05D001366 ORTHO05D003220 2.5e-16 89.4 62 67.7
Lj6C809G13 Lonicera japonica HOM05D001366 ORTHO05D003220 2.5e-16 89.4 64 67.2
Ciclev10030499m.g Citrus clementina HOM05D001366 ORTHO05D003220 3.2e-16 89.0 62 69.4
MD13G1096800 Malus domestica HOM05D001366 ORTHO05D003220 3.2e-16 89.0 62 67.7
MSTRG.7915 Avicennia marina HOM05D001366 ORTHO05D003220 4.2e-16 88.6 63 65.1
Glyma.08G283700 Glycine max HOM05D001366 ORTHO05D003220 5.5e-16 88.2 62 67.7
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 9.3e-16 87.4 62 67.7
Thhalv10006565m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 9.3e-16 87.4 62 67.7
AT1G10760 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 1.2e-15 87.0 62 67.7
BcaB08g37373 Brassica carinata HOM05D001366 ORTHO05D003220 1.2e-15 87.0 62 67.7
C08p48530 Brassica napus HOM05D001366 ORTHO05D003220 1.2e-15 87.0 62 67.7
A09p64660 Brassica napus HOM05D001366 ORTHO05D003220 1.6e-15 86.7 62 67.7
BolC8t52392H Brassica oleracea HOM05D001366 ORTHO05D003220 1.6e-15 86.7 62 67.7
Sp1g09460 Schrenkiella parvula HOM05D001366 ORTHO05D003220 1.6e-15 86.7 62 66.1
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 2.1e-15 86.3 62 66.1
TAR374G1700 Trochodendron aralioides HOM05D001366 ORTHO05D003220 2.1e-15 86.3 63 66.7
Aqoxy3G02840 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 2.7e-15 85.9 69 63.8
Carub.0001s1031 Capsella rubella HOM05D001366 ORTHO05D003220 2.7e-15 85.9 62 66.1
Medtr8g069760 Medicago truncatula HOM05D001366 ORTHO05D003220 2.7e-15 85.9 62 66.1
Phvul.003G062900 Phaseolus vulgaris HOM05D001366 ORTHO05D003220 2.7e-15 85.9 62 66.1
BraA09t41826Z Brassica rapa HOM05D001366 ORTHO05D003220 3.5e-15 85.5 62 66.1
Psat4g114240 Pisum sativum HOM05D001366 ORTHO05D003220 3.5e-15 85.5 62 67.7
TPR.G23137 Trifolium pratense HOM05D001366 ORTHO05D003220 3.5e-15 85.5 62 64.5
CARHR010980 Cardamine hirsuta HOM05D001366 ORTHO05D003220 4.6e-15 85.1 62 67.7
Eucgr.H02531 Eucalyptus grandis HOM05D001366 ORTHO05D003220 4.6e-15 85.1 65 66.2
CDE04G3560 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 6.0e-15 84.7 62 66.1
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 1.0e-14 84.0 62 66.1
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 1.0e-14 84.0 63 63.5
arahy.Tifrunner.gnm1.ann1.52KDTF Arachis hypogaea HOM05D001366 ORTHO05D003220 1.3e-14 83.6 62 66.1
arahy.Tifrunner.gnm1.ann1.N2L19B Arachis hypogaea HOM05D001366 ORTHO05D003220 1.3e-14 83.6 62 66.1
Ca_22500_v3 Cicer arietinum L. HOM05D001366 ORTHO05D003220 1.3e-14 83.6 62 62.9
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 1.3e-14 83.6 62 64.5
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 1.8e-14 83.2 62 66.1
Lj4g0012667 Lotus japonicus HOM05D001366 ORTHO05D003220 2.3e-14 82.8 60 68.3
unitig_26.g10358 Utricularia gibba HOM05D001366 ORTHO05D003220 2.3e-14 82.8 101 47.5
ATR1152G017 Amborella trichopoda HOM05D001366 ORTHO05D003220 5.1e-14 81.6 62 58.1
Ah.03g133220 Amaranthus hybridus HOM05D001366 ORTHO05D003220 8.7e-14 80.9 62 64.5
CDE06G0295 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 1.1e-13 80.5 60 66.7
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 1.5e-13 80.1 62 64.5
Lsat_1_v5_gn_4_4920 Lactuca sativa HOM05D001366 ORTHO05D003220 1.9e-13 79.7 62 66.1
Oeu038612.1 Olea europaea HOM05D001366 ORTHO05D003220 1.9e-13 79.7 63 65.1
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 2.1e-12 76.3 62 59.7
ECA234G4650 Erigeron canadensis HOM05D001366 ORTHO05D003220 2.1e-12 76.3 62 61.3
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 4.8e-12 75.1 62 59.7
Os06g0498400 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D003220 1.1e-11 73.9 63 55.6
HPP92_003084 Vanilla planifolia HOM05D001366 ORTHO05D003220 1.1e-11 73.9 62 56.5
HanXRQChr12g0384161 Helianthus annuus HOM05D001366 ORTHO05D003220 1.4e-11 73.6 62 58.1
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 1.4e-11 73.6 63 60.3
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 1.8e-11 73.2 62 58.1
SGA_v2.0_scaffold228G43260 Striga asiatica HOM05D001366 ORTHO05D003220 2.4e-11 72.8 93 41.9
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 1.2e-10 70.5 62 53.2
SEGI_00676 Sequoiadendron giganteum HOM05D001366 ORTHO05D016428 2.6e-10 69.3 62 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 4.5e-10 68.6 62 50.0
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 5.9e-10 68.2 62 51.6
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 5.9e-10 68.2 62 51.6
Gohir.A01G159900 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.7e-09 66.6 62 58.1
Zm00001eb278140 Zea mays HOM05D001366 ORTHO05D003220 6.5e-09 64.7 65 50.8
MBI16_g27903_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 1.9e-08 63.2 60 48.3
SEGI_00062 Sequoiadendron giganteum HOM05D001366 ORTHO05D016210 1.9e-08 63.2 61 50.8
Nn5g29817 Nelumbo nucifera HOM05D001366 ORTHO05D003220 5.5e-08 61.6 60 51.7
Hma1.2p1_0044F.1_g026380 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 9.3e-08 60.8 68 50.0
Pp3c3_11200 Physcomitrium patens HOM05D001366 ORTHO05D003220 1.6e-07 60.1 62 45.2
TAR628G1058 Trochodendron aralioides HOM05D001366 ORTHO05D003220 2.7e-07 59.3 60 46.7
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 6.1e-07 58.2 60 45.0
QL09p018643 Quercus lobata HOM05D001366 ORTHO05D003220 1.3e-06 57.0 60 46.7
Dinv42591 Davidia involucrata HOM05D001366 ORTHO05D003220 1.8e-06 56.6 60 45.0
Nitab4.5_0002255g0040 Nicotiana tabacum HOM05D001366 ORTHO05D003220 3.9e-06 55.5 42 69.0
PSO675G6980 Papaver somniferum HOM05D001366 ORTHO05D003220 5.1e-06 55.1 60 40.0
Nitab4.5_0007943g0010 Nicotiana tabacum HOM05D001366 ORTHO05D003220 6.7e-06 54.7 34 79.4
SMO347G0598 Selaginella moellendorffii HOM05D001366 ORTHO05D003220 6.7e-06 54.7 81 38.3


User provided reference genes

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