Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 1.1e-34 149.4 80 100.0
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.7e-14 82.4 75 72.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 72.0
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 2.2e-14 82.0 73 68.5
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.2e-14 82.0 75 69.3
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 2.9e-14 81.6 75 72.0
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 2.9e-14 81.6 75 70.7
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.9e-14 81.6 75 69.3
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 70.7
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 68.0
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 70.7
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 72.0
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 68.0
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 70.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 70.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 72.0
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 72.0
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 72.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 3.8e-14 81.3 75 72.0
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 5.0e-14 80.9 75 70.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 5.0e-14 80.9 75 69.3
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 5.0e-14 80.9 75 69.3
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 5.0e-14 80.9 75 70.7
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 5.0e-14 80.9 75 68.0
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 6.5e-14 80.5 75 69.3
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.5e-14 80.1 75 66.7
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.5e-14 80.1 75 66.7
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 8.5e-14 80.1 75 69.3
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 8.5e-14 80.1 75 69.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 8.5e-14 80.1 75 68.0
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.1e-13 79.7 75 69.3
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.1e-13 79.7 75 70.7
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.1e-13 79.7 75 68.0
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.1e-13 79.7 75 69.3
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 1.1e-13 79.7 73 69.9
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.1e-13 79.7 75 69.3
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.1e-13 79.7 79 67.1
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.5e-13 79.3 75 69.3
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.5e-13 79.3 75 66.7
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.5e-13 79.3 75 69.3
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.5e-13 79.3 75 69.3
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.5e-13 79.3 75 69.3
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.9e-13 79.0 75 68.0
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.9e-13 79.0 72 72.2
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.9e-13 79.0 75 66.7
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 68.0
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 66.7
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 65.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 65.3
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 65.3
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 2.5e-13 78.6 75 68.0
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 3.2e-13 78.2 74 68.9
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 65.3
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 3.2e-13 78.2 80 65.0
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 3.2e-13 78.2 80 65.0
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 69.3
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 69.3
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 65.3
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 68.0
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 68.0
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 3.2e-13 78.2 74 70.3
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.2e-13 78.2 74 67.6
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.2e-13 78.2 75 68.0
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 4.2e-13 77.8 75 68.0
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 4.2e-13 77.8 80 65.0
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 7.2e-13 77.0 74 68.9
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 7.2e-13 77.0 75 66.7
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 9.4e-13 76.6 75 68.0
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.2e-12 76.3 74 64.9
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.2e-12 76.3 75 64.0
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.6e-12 75.9 73 64.4
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 2.7e-12 75.1 75 64.0
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.7e-12 75.1 73 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 3.6e-12 74.7 73 64.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 4.7e-12 74.3 73 63.0
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 6.1e-12 73.9 73 61.6
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.0e-12 73.6 78 61.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.0e-11 73.2 75 62.7
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.0e-11 73.2 73 61.6
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 62.7
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 60.0
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.4e-11 72.8 73 61.6
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 62.7
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 62.7
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 62.7
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.4e-11 72.8 75 62.7
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.8e-11 72.4 72 62.5
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 1.8e-11 72.4 75 61.3
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 4.0e-11 71.2 74 63.5
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.0e-11 71.2 72 58.3
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 6.7e-11 70.5 75 60.0
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 8.8e-11 70.1 73 61.6
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-10 69.7 72 59.7
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.1e-10 69.7 64 64.1
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 2.0e-10 68.9 75 64.0
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.0e-10 68.9 75 64.0
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 2.0e-10 68.9 75 64.0
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 2.0e-10 68.9 75 64.0
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.6e-10 68.6 73 61.6
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-10 68.6 75 64.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-10 68.6 75 61.3
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-10 68.6 75 61.3
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.6e-10 68.6 52 73.1
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.6e-10 68.6 52 73.1
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.6e-10 68.6 75 65.3
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 5.7e-10 67.4 72 58.3
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-10 67.4 72 58.3
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 7.5e-10 67.0 75 64.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 9.7e-10 66.6 52 73.1
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 9.7e-10 66.6 70 60.0
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 9.7e-10 66.6 73 57.5
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-09 66.2 52 71.2
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.2e-09 65.5 73 56.2
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.8e-09 65.1 75 54.7
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 3.1e-08 61.6 75 53.3
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 7.0e-08 60.5 48 72.9
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.7e-06 55.8 76 53.9
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.8e-06 54.7 75 53.3


User provided reference genes

Program Settings