Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.4e-47 190.7 96 100.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.7e-24 114.8 95 69.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-21 106.3 94 64.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.1e-20 103.2 95 62.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.5e-20 102.1 94 63.8
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.3e-20 101.3 95 61.1
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.3e-20 100.5 94 63.8
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.5e-20 100.1 95 61.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.1e-19 99.0 95 60.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.8e-19 98.6 94 61.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 4.7e-19 97.8 95 58.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 6.2e-19 97.4 95 58.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 8.1e-19 97.1 95 61.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 3.1e-18 95.1 95 58.9
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.1e-18 95.1 95 58.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 5.2e-18 94.4 108 53.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.2e-18 94.4 95 58.9
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.2e-17 93.2 95 55.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-17 93.2 95 58.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.5e-17 92.8 94 58.5
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.6e-17 92.0 94 55.3
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.4e-17 91.7 95 58.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.4e-17 91.3 94 56.4
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.8e-17 90.9 94 54.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 5.8e-17 90.9 95 56.8
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 9.9e-17 90.1 94 55.3
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 9.9e-17 90.1 95 54.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.3e-16 89.7 94 53.2
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.7e-16 89.4 95 54.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.2e-16 89.0 93 54.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.2e-16 89.0 95 56.8
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.2e-16 89.0 95 56.8
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.2e-16 89.0 95 56.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.9e-16 88.6 95 55.8
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-16 88.6 95 55.8
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-16 88.6 95 55.8
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.9e-16 88.6 95 55.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.9e-16 88.6 95 55.8
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.9e-16 88.6 101 56.4
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.9e-16 87.8 97 54.6
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 4.9e-16 87.8 88 58.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.9e-16 87.8 95 54.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.9e-16 87.8 95 56.8
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.9e-16 87.8 95 56.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 6.4e-16 87.4 95 55.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 6.4e-16 87.4 95 54.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 8.3e-16 87.0 109 52.3
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 8.3e-16 87.0 99 51.5
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 8.3e-16 87.0 95 55.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-15 86.7 104 49.0
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.1e-15 86.7 95 52.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.4e-15 86.3 95 52.6
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.4e-15 86.3 99 53.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.4e-15 85.5 94 51.1
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.4e-15 85.5 99 50.5
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 3.2e-15 85.1 94 51.1
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.2e-15 85.1 95 51.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.2e-15 85.1 94 53.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.2e-15 85.1 95 55.8
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.1e-15 84.7 94 53.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.1e-15 84.7 95 52.6
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.1e-15 84.0 94 51.1
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 7.1e-15 84.0 92 52.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 7.1e-15 84.0 109 48.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 7.1e-15 84.0 95 51.6
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 9.2e-15 83.6 94 52.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 9.2e-15 83.6 94 52.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.2e-15 83.6 99 48.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 9.2e-15 83.6 99 48.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 9.2e-15 83.6 99 52.5
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-14 83.2 88 55.7
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.2e-14 83.2 88 55.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.1e-14 82.4 95 51.6
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.1e-14 82.4 89 56.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.1e-14 82.4 99 48.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.7e-14 82.0 97 50.5
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 3.5e-14 81.6 95 51.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.5e-14 81.6 99 47.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.5e-14 81.6 94 51.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.6e-14 81.3 96 49.0
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.6e-14 81.3 93 48.4
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.6e-14 81.3 89 55.1
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.0e-14 80.9 93 51.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 6.0e-14 80.9 99 47.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 7.8e-14 80.5 95 50.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-13 80.1 88 54.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.3e-13 79.7 99 48.5
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.3e-13 79.7 88 54.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.7e-13 79.3 99 48.5
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.3e-13 79.0 95 49.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.1e-13 77.8 94 48.9
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.1e-13 77.8 95 48.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.6e-13 77.4 112 42.9
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 6.6e-13 77.4 99 46.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 8.6e-13 77.0 99 46.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.1e-12 76.6 99 44.4
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.5e-12 76.3 95 46.3
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.5e-12 75.5 94 46.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.5e-12 75.5 88 52.3
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 3.3e-12 75.1 99 46.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.3e-12 75.1 89 50.6
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.3e-12 74.7 99 45.5
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.3e-12 74.7 96 44.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.2e-11 73.2 93 47.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.2e-11 73.2 93 47.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-11 73.2 100 47.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.6e-11 72.8 89 48.3
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.8e-11 72.0 93 44.1
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-11 72.0 90 48.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-11 72.0 90 48.9
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-11 72.0 100 46.0
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.6e-11 71.6 92 45.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.2e-11 70.9 90 46.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 8.1e-11 70.5 95 45.3
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.4e-10 69.7 90 50.0
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.4e-10 68.9 94 44.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.1e-10 68.6 96 45.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.1e-10 68.6 44 72.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 5.2e-10 67.8 95 41.1
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 6.8e-10 67.4 82 51.2
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.4e-09 65.1 44 70.5
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.2e-08 62.4 44 65.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.9e-08 62.0 92 43.5
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-07 59.3 81 45.7
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.4e-07 57.8 88 40.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.2e-06 56.6 95 37.9
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 6.0e-06 54.3 88 40.9


User provided reference genes

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