Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 4.0e-306 1054.3 682 100.0
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 6.2e-230 801.2 674 78.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 7.5e-228 794.3 633 84.8
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.4e-226 789.3 708 71.6
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 9.2e-226 787.3 681 80.0
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 3.0e-224 782.3 676 80.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-223 780.0 679 75.7
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.8e-222 775.8 690 76.8
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-221 773.1 667 80.2
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.3e-221 772.7 690 76.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 5.8e-220 768.1 690 75.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.3e-219 764.2 679 72.0
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.1e-218 763.8 685 69.6
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.4e-218 763.5 678 77.0
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 4.1e-218 761.9 684 74.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 4.1e-218 761.9 663 75.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 7.1e-218 761.1 677 78.3
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 9.2e-218 760.8 655 75.3
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 3.5e-217 758.8 679 77.0
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 7.8e-217 757.7 667 78.0
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.7e-216 756.5 679 76.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.3e-216 756.1 669 75.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 5.1e-216 755.0 679 78.5
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.5e-215 753.4 670 77.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.9e-215 753.1 668 79.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.3e-215 752.3 673 77.7
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 9.5e-215 750.7 669 75.5
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.5e-215 750.7 679 75.1
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.2e-214 750.4 679 76.1
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.2e-214 750.4 673 79.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.1e-214 749.6 671 78.4
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.4e-213 746.1 686 72.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.0e-212 743.0 679 75.6
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 4.4e-212 741.9 686 74.8
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-211 740.3 679 74.5
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 2.9e-211 739.2 694 77.1
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 2.9e-211 739.2 652 77.6
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.9e-211 738.4 648 79.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 4.9e-211 738.4 658 79.2
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.1e-210 737.3 661 74.0
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.1e-210 737.3 675 72.4
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.4e-210 736.9 676 75.7
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.4e-210 736.9 686 73.0
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.4e-210 736.1 675 73.5
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.2e-210 735.7 664 73.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.2e-209 733.8 682 75.4
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.5e-209 732.3 670 72.4
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.6e-209 731.9 671 74.5
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.7e-208 729.9 674 77.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.3e-208 729.6 682 74.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.3e-207 725.3 679 76.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 7.3e-207 724.5 696 76.3
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 9.6e-207 724.2 671 72.9
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 3.6e-206 722.2 664 77.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 4.7e-206 721.8 677 74.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.2e-206 721.5 661 76.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.1e-205 719.2 671 77.2
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.5e-204 716.8 648 75.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 7.6e-204 714.5 685 75.8
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.2e-203 713.0 673 71.2
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.9e-203 712.6 675 75.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.4e-202 710.3 679 68.2
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.9e-202 709.9 677 75.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-201 707.2 671 71.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.2e-201 707.2 671 71.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-201 706.8 671 71.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-201 706.4 671 71.7
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.1e-201 706.4 671 71.7
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.0e-200 704.1 671 70.9
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.3e-200 703.7 671 71.2
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.7e-200 703.4 662 72.2
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-200 703.4 673 71.6
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.9e-200 702.2 678 75.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.9e-199 699.9 661 72.3
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.5e-199 699.5 640 75.8
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.3e-199 698.7 671 71.1
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 7.3e-199 698.0 671 70.9
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 7.3e-199 698.0 654 66.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.8e-198 695.3 662 71.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 6.2e-198 694.9 664 69.6
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.4e-197 693.7 674 71.1
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.1e-197 692.6 637 70.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 4.0e-197 692.2 649 74.9
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.2e-196 690.6 676 69.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 2.0e-196 689.9 676 74.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.0e-196 689.9 576 73.8
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 4.5e-196 688.7 656 74.2
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.4e-194 681.8 691 72.4
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 3.5e-193 679.1 597 81.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.5e-193 679.1 681 69.2
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 6.0e-193 678.3 571 77.8
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.3e-192 677.2 680 69.3
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.9e-192 675.6 680 68.7
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.1e-192 675.2 556 78.6
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-191 673.3 671 69.3
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.5e-191 672.9 717 65.3
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.1e-189 667.5 677 68.8
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.2e-188 664.1 672 68.6
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.5e-188 662.1 677 70.2
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 5.8e-188 661.8 665 69.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.3e-187 660.6 629 72.5
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.5e-185 652.5 673 72.1
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.4e-179 631.3 680 57.2
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.1e-178 630.9 658 65.5
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-178 629.8 653 66.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.2e-178 629.0 654 64.5
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.1e-175 620.9 571 75.1
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.8e-174 615.5 675 66.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.9e-170 603.6 670 65.5
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.0e-167 593.6 525 84.0
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 9.1e-157 558.1 521 74.1
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.5e-156 557.4 674 68.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.5e-155 552.0 598 64.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.7e-150 536.2 673 55.3
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.0e-143 513.8 521 72.7
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.4e-143 512.7 727 61.2
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.9e-139 500.0 603 56.7
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.2e-137 494.6 527 69.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 2.3e-136 490.3 525 63.0
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 3.4e-135 486.5 507 70.6
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 6.3e-134 482.3 670 51.3
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.6e-123 445.7 615 52.5
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.4e-120 438.0 308 77.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.4e-117 426.0 292 76.0
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 9.2e-109 398.7 511 56.8
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 8.1e-105 385.6 456 49.1
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.9e-102 376.3 323 72.1
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.1e-101 373.2 251 74.5
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 9.2e-101 372.1 477 63.3
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.8e-89 333.2 476 58.4
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 9.0e-88 328.9 225 84.0
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 4.9e-78 296.6 290 56.6
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 6.7e-75 286.2 288 58.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.3e-74 283.9 386 63.2
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 9.0e-72 275.8 286 81.8
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.6e-71 274.2 210 68.6
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 6.7e-67 259.6 216 82.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 6.9e-64 249.6 232 56.0
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.0e-62 245.7 319 64.3
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.0e-59 234.2 296 50.0
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-58 231.9 296 46.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 3.4e-55 220.7 138 78.3
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.1e-52 211.5 217 52.1
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-48 198.7 111 87.4
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-46 191.4 111 84.7
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 7.2e-45 186.4 289 72.7
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.8e-40 171.8 167 56.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.3e-38 165.6 81 93.8
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.1e-37 162.5 181 57.5
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.2e-35 153.7 98 80.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-34 151.4 95 81.1
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.3e-34 151.0 98 80.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-33 148.7 107 73.8
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 3.2e-29 134.4 131 51.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-29 133.7 322 48.1
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.2e-22 111.7 552 31.3
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.2e-19 100.5 68 75.0
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.0e-18 98.6 69 66.7
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.4e-16 91.7 603 28.5
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-15 88.6 54 79.6
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 4.5e-15 87.4 158 37.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 7.7e-15 86.7 168 36.3
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.9e-13 82.0 176 29.0
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 2.5e-13 81.6 161 41.6
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.3e-13 81.3 68 57.4
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 7.3e-13 80.1 120 42.5
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 9.5e-13 79.7 62 59.7
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-11 75.5 63 57.1
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.5e-10 72.4 64 53.1
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 4.4e-10 70.9 73 50.7
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 1.2e-07 62.8 55 56.4
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.6e-07 62.4 68 54.4
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 5.9e-07 60.5 122 38.5
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-06 58.9 37 67.6
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 2.3e-06 58.5 120 35.8
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 3.9e-06 57.8 59 47.5
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 8.6e-06 56.6 49 53.1


User provided reference genes

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