Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 0.0e+00 1190.6 607 100.0
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 0.0e+00 1179.9 607 99.2
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 4.4e-296 1020.8 606 84.7
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.4e-286 989.2 612 82.7
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 4.7e-282 974.2 610 82.3
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 1.4e-262 909.4 605 76.9
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 2.5e-259 898.7 603 75.8
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 1.8e-257 892.5 604 75.3
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 7.6e-256 887.1 606 73.3
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 9.9e-256 886.7 606 74.1
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 2.9e-255 885.2 606 74.6
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 2.3e-252 875.5 605 74.5
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 1.1e-251 873.2 606 74.3
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.5e-251 872.8 606 71.3
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 4.3e-251 871.3 605 73.6
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 9.6e-251 870.2 606 72.9
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.3e-250 869.8 606 71.0
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 6.2e-250 867.5 609 72.7
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 2.2e-247 859.0 609 72.2
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 2.4e-246 855.5 644 67.2
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 5.5e-246 854.4 606 72.6
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.6e-245 852.8 606 71.8
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 1.8e-244 849.4 606 71.9
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 2.3e-244 849.0 609 72.9
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 5.1e-244 847.8 604 72.7
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 2.1e-242 842.4 608 71.2
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 6.2e-242 840.9 607 71.2
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 3.4e-240 835.1 606 72.1
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 3.4e-240 835.1 607 71.2
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 5.8e-240 834.3 605 71.7
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 1.0e-239 833.6 602 72.3
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.3e-239 833.2 628 69.6
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 9.3e-238 827.0 610 71.0
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 1.8e-236 822.8 606 71.1
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 1.8e-236 822.8 603 70.8
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 5.1e-236 821.2 604 71.5
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 8.7e-236 820.5 623 69.2
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.2e-234 815.8 608 69.9
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 2.2e-234 815.8 613 69.5
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 3.7e-234 815.1 604 71.2
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.1e-233 812.0 608 69.7
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 4.1e-233 811.6 606 68.3
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 4.1e-233 811.6 581 71.3
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 5.3e-233 811.2 608 69.2
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 5.9e-232 807.7 619 70.0
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.0e-231 807.0 614 69.1
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 8.5e-231 803.9 605 67.6
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 1.2e-229 800.0 605 67.4
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 2.1e-229 799.3 578 71.5
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 2.7e-229 798.9 610 69.2
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 7.4e-227 790.8 628 67.0
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 1.7e-226 789.6 604 69.0
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.7e-226 788.5 628 66.9
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 6.3e-226 787.7 606 67.8
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 6.3e-226 787.7 605 67.6
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.1e-225 786.9 606 63.9
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 4.1e-225 785.0 605 67.6
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 1.5e-224 783.1 602 67.6
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 7.7e-224 780.8 602 67.4
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 3.2e-222 775.4 602 67.1
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 9.4e-222 773.9 605 66.6
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 6.7e-220 767.7 605 65.8
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 6.7e-220 767.7 602 66.8
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-219 766.9 601 66.7
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 1.1e-219 766.9 601 66.7
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 1.1e-219 766.9 601 66.7
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 3.7e-218 761.9 586 68.3
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 2.4e-217 759.2 602 66.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.0e-215 753.8 553 70.9
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 1.4e-214 750.0 609 65.4
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 3.2e-214 748.8 631 63.2
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 1.2e-213 746.9 611 66.8
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 1.1e-211 740.3 513 75.6
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 2.6e-211 739.2 602 65.1
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 4.4e-211 738.4 613 63.5
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 6.3e-210 734.6 512 74.2
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.1e-209 733.8 578 68.2
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 9.1e-209 730.7 535 69.3
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 1.2e-208 730.3 586 67.4
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 1.6e-205 719.9 606 64.4
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 2.6e-203 712.6 612 62.7
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.2e-202 709.5 493 77.7
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 1.1e-201 707.2 605 61.3
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 1.5e-198 696.8 485 74.0
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 7.2e-198 694.5 608 61.3
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 1.3e-167 594.0 546 59.9
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 2.7e-160 569.7 441 69.4
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 9.6e-150 534.6 440 61.6
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 8.1e-149 531.6 406 69.0
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 7.8e-144 515.0 655 45.5
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 9.0e-140 501.5 653 44.0
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.3e-138 497.7 643 42.1
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 1.2e-136 491.1 401 62.8
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.6e-133 480.7 418 62.7
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 5.3e-132 475.7 359 70.5
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 2.3e-127 460.3 354 70.3
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.1e-126 458.0 354 65.0
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 5.7e-126 455.7 354 70.3
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.6e-117 427.6 630 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 5.0e-114 416.0 598 39.8
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 2.9e-98 363.6 352 57.4
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.7e-93 347.8 399 48.9
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 6.3e-85 319.3 363 51.5
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 2.8e-77 293.9 753 30.9
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 5.5e-73 279.6 158 84.2
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 9.8e-70 268.9 689 30.3
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 8.3e-69 265.8 674 30.4
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 1.8e-68 264.6 160 77.5
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 3.5e-67 260.4 159 79.9
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 2.8e-64 250.8 172 70.3
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.2e-56 225.3 204 56.9
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 8.1e-56 222.6 296 46.6
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 2.6e-54 217.6 176 59.1
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 4.4e-54 216.9 136 75.7
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 4.4e-54 216.9 228 50.4
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 5.4e-52 209.9 117 83.8
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 8.6e-50 202.6 291 44.0
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 3.3e-49 200.7 184 58.7
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 3.3e-49 200.7 184 58.7
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 7.3e-49 199.5 262 44.7
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 4.7e-48 196.8 117 76.1
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 7.8e-43 179.5 235 43.8
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 3.0e-42 177.6 96 87.5
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 2.8e-40 171.0 161 57.8
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 3.6e-40 170.6 117 65.8
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 1.4e-39 168.7 125 67.2
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 4.2e-36 157.1 114 69.3
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 1.0e-34 152.5 145 57.9
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 1.6e-32 145.2 408 28.7
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.8e-31 141.7 130 53.8
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 5.8e-30 136.7 93 66.7
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.7e-26 125.2 87 72.4
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 7.3e-25 119.8 83 68.7
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 1.3e-24 119.0 361 30.5
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 3.7e-16 90.9 223 24.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 1.1e-15 89.4 220 27.7
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.1e-15 89.4 220 27.7
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 4.5e-14 84.0 223 26.5
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 2.2e-13 81.6 347 23.6
BolC9t57946H Brassica oleracea HOM05D005251 ORTHO05D006680 1.1e-12 79.3 51 66.7
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.5e-12 78.2 223 25.1
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 4.2e-12 77.4 223 25.1
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 4.2e-12 77.4 231 25.5
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 7.1e-12 76.6 234 25.6
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 7.1e-12 76.6 216 26.4
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 9.3e-12 76.3 53 73.6
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 9.3e-12 76.3 223 25.1
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 1.2e-11 75.9 223 24.2
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 1.6e-11 75.5 223 25.1
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 1.6e-11 75.5 226 25.2
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.6e-11 75.5 223 25.1
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 3.5e-11 74.3 247 24.3
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 4.6e-11 73.9 42 85.7
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 4.6e-11 73.9 237 24.1
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 4.6e-11 73.9 196 28.6
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 7.9e-11 73.2 234 23.5
C06p07130 Brassica napus HOM05D005251 ORTHO05D006680 7.9e-11 73.2 41 73.2
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 7.9e-11 73.2 219 26.9
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.0e-10 72.8 220 25.9
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 1.8e-10 72.0 224 25.0
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.9e-10 70.9 224 23.7
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.7e-10 70.1 220 25.5
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 6.7e-10 70.1 161 29.2
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 8.7e-10 69.7 220 25.5
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 3.3e-09 67.8 157 29.3
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 2.8e-08 64.7 36 75.0
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 6.3e-08 63.5 225 25.3
BolC6t35802H Brassica oleracea HOM05D005251 ORTHO05D006680 9.0e-07 59.7 55 56.4
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 2.0e-06 58.5 263 22.8
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 5.9e-06 57.0 123 28.5


User provided reference genes

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