Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.4e-281 972.2 479 100.0
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 5.8e-243 844.0 629 73.3
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 1.1e-188 663.7 602 61.1
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 2.3e-167 592.8 630 52.1
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 5.0e-162 575.1 628 51.8
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.5e-158 563.5 588 55.1
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 2.0e-158 563.1 598 53.8
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.7e-157 560.1 542 58.9
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 2.4e-156 556.2 629 51.2
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 6.6e-154 548.1 612 51.3
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 6.6e-154 548.1 591 53.3
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.2e-152 543.9 633 49.8
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 4.7e-152 542.0 622 51.0
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 6.4e-149 531.6 632 49.5
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.1e-148 530.8 569 53.3
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 1.4e-148 530.4 598 51.5
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 1.3e-146 523.9 620 48.4
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 2.3e-146 523.1 633 48.7
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.3e-146 523.1 596 50.5
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 3.0e-146 522.7 596 51.2
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 3.9e-146 522.3 595 51.3
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.6e-145 518.5 596 50.2
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 5.2e-143 511.9 598 49.5
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 2.0e-142 510.0 632 47.5
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.7e-141 506.9 622 47.1
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.9e-141 506.1 632 47.3
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 3.8e-141 505.8 632 47.2
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.9e-140 503.4 603 47.1
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 5.4e-140 501.9 517 53.2
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 2.7e-139 499.6 624 47.0
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 2.7e-139 499.6 594 47.8
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 4.6e-139 498.8 616 47.9
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.3e-138 497.3 630 47.3
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 6.6e-138 495.0 565 50.3
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 8.7e-138 494.6 621 46.1
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 1.1e-137 494.2 625 45.8
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 5.6e-137 491.9 622 46.0
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 9.6e-137 491.1 631 46.9
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.3e-136 490.7 621 46.1
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 1.3e-136 490.7 622 45.2
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 1.8e-135 486.9 622 46.0
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 2.4e-135 486.5 604 45.5
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 1.5e-134 483.8 624 46.8
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 7.6e-134 481.5 620 46.0
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 9.9e-134 481.1 619 46.0
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 8.4e-133 478.0 600 46.0
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.1e-132 477.6 623 45.4
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 3.2e-132 476.1 600 46.5
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 9.3e-132 474.6 572 48.6
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.1e-131 473.4 612 45.4
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 2.7e-131 473.0 617 44.9
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 3.5e-131 472.6 616 46.1
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 1.0e-130 471.1 623 44.6
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.3e-130 469.9 600 46.2
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 1.5e-129 467.2 566 48.8
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 1.9e-129 466.8 614 45.0
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 2.5e-129 466.5 625 45.1
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 7.3e-129 464.9 552 49.6
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 1.6e-128 463.8 600 46.2
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 1.4e-127 460.7 602 46.0
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 1.8e-127 460.3 616 43.3
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 2.4e-127 459.9 600 45.8
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 5.3e-127 458.8 616 43.5
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 3.4e-126 456.1 625 43.8
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 5.8e-126 455.3 601 45.1
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 9.9e-126 454.5 598 45.3
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.1e-124 451.1 622 43.7
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 5.5e-124 448.7 574 44.9
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 7.1e-124 448.4 652 44.5
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 3.0e-122 443.0 699 41.1
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 3.9e-122 442.6 628 43.3
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 5.1e-122 442.2 531 47.5
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 5.1e-122 442.2 617 42.6
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 8.7e-122 441.4 606 43.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.1e-121 441.0 611 43.0
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.5e-121 440.7 617 42.6
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.5e-121 440.7 604 43.9
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 2.5e-121 439.9 619 43.5
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 8.1e-120 434.9 603 45.4
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.1e-119 434.5 605 44.5
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 1.4e-119 434.1 606 42.7
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 5.3e-119 432.2 538 48.3
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.5e-117 425.2 571 44.1
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.4e-116 424.1 611 42.1
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.4e-116 424.1 604 42.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 4.2e-116 422.5 611 41.9
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 3.0e-114 416.4 590 43.2
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 5.0e-109 399.1 599 43.6
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 2.7e-107 393.3 593 42.2
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 6.1e-107 392.1 636 42.0
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 2.3e-106 390.2 606 40.4
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 2.5e-105 386.7 539 43.0
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.8e-104 383.3 606 40.1
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 6.5e-101 372.1 507 43.6
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 1.4e-100 370.9 563 40.9
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 6.1e-99 365.5 544 42.6
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 9.7e-97 358.2 511 43.6
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.5e-89 334.3 661 34.8
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 1.7e-88 330.9 655 35.1
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 2.4e-87 327.0 516 40.1
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.1e-87 326.2 661 34.3
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 2.6e-86 323.6 647 34.9
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 1.8e-82 310.8 439 47.2
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 2.6e-81 307.0 398 48.0
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 2.6e-65 253.8 424 39.9
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 5.6e-52 209.5 202 53.5
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 4.7e-51 206.5 213 53.5
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.0e-50 205.3 642 30.1
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.4e-47 193.0 201 50.7
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 5.0e-45 186.4 616 29.1
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 6.0e-38 162.9 571 27.5
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 2.1e-35 154.5 136 58.8
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 3.6e-35 153.7 201 42.8
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 4.7e-35 153.3 164 50.6
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 1.4e-34 151.8 148 54.1
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.3e-32 145.2 363 33.3
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 6.4e-32 142.9 300 36.3
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 3.0e-29 134.0 210 41.4
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 3.9e-29 133.7 313 34.2
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 8.9e-26 122.5 88 65.9
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 4.4e-25 120.2 254 36.2
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 3.2e-23 114.0 218 34.4
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 2.1e-22 111.3 98 56.1
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 2.1e-22 111.3 98 56.1
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 7.8e-22 109.4 213 36.2
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 9.0e-18 95.9 204 34.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.2e-17 95.5 128 43.0
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 9.9e-17 92.4 62 74.2
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 1.3e-13 82.0 51 70.6
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 2.3e-13 81.3 56 58.9
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 1.2e-09 68.9 57 56.1
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.2e-09 68.9 44 61.4
MBI19_g46141_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 7.6e-09 66.2 60 45.0
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 5.5e-07 60.1 49 63.3


User provided reference genes

Program Settings