Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.4e-127 457.6 222 100.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-93 345.5 220 80.9
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.3e-91 337.8 220 78.2
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.6e-78 295.4 220 71.4
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-73 280.0 183 77.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 6.5e-72 274.6 220 65.0
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.5e-71 271.6 220 65.0
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.6e-70 268.9 216 62.0
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.3e-69 266.2 220 64.1
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.0e-69 265.8 220 60.9
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.1e-66 257.3 220 59.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.7e-65 252.7 220 58.2
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 7.7e-65 251.1 220 59.1
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.2e-64 249.6 220 57.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 3.8e-64 248.8 220 60.5
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.1e-63 247.3 216 58.3
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.5e-63 246.9 219 57.1
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.9e-63 246.5 219 57.5
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 1.9e-63 246.5 220 60.0
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.2e-63 245.4 220 58.2
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.2e-63 245.4 220 58.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 5.5e-63 245.0 216 57.4
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.5e-63 245.0 220 57.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 7.2e-63 244.6 220 58.2
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 7.2e-63 244.6 220 57.3
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.6e-62 243.4 218 58.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.6e-62 242.3 215 58.6
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.7e-62 241.9 220 57.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 8.0e-62 241.1 217 54.4
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.0e-61 240.7 220 57.3
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.4e-61 240.4 221 56.1
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 3.0e-61 239.2 218 53.2
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.0e-61 239.2 219 56.2
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 4.0e-61 238.8 217 53.5
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 8.8e-61 237.7 218 57.3
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.0e-60 236.5 220 55.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 4.4e-60 235.3 211 57.8
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 5.7e-60 235.0 220 54.5
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 5.7e-60 235.0 220 56.4
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 5.7e-60 235.0 217 54.8
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 9.8e-60 234.2 217 54.8
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.7e-59 233.4 217 53.0
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.8e-59 232.6 220 54.1
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.8e-59 232.6 220 56.4
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 6.3e-59 231.5 217 54.8
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.4e-58 229.6 226 55.3
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 3.1e-58 229.2 213 57.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 4.1e-58 228.8 216 54.2
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 7.0e-58 228.0 222 54.1
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 9.2e-58 227.6 218 56.4
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-57 226.9 222 54.1
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.7e-57 226.1 222 54.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.5e-57 225.7 225 55.1
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.7e-57 224.6 222 54.1
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.7e-57 224.6 222 54.1
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.0e-56 224.2 218 53.7
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.0e-56 224.2 225 53.8
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.0e-56 221.9 216 56.5
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.6e-56 221.1 220 53.2
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.1e-55 220.7 217 51.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.5e-55 219.5 217 53.5
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.3e-55 219.2 220 53.2
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 4.3e-55 218.8 212 53.8
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.6e-55 218.4 213 53.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 9.5e-55 217.6 225 53.3
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.2e-54 217.2 225 51.1
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.6e-54 216.9 217 53.5
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-54 216.9 220 52.3
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.1e-54 216.5 217 50.7
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.5e-52 210.3 217 51.6
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 2.0e-52 209.9 221 52.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.7e-52 208.4 199 59.3
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.3e-51 207.2 220 50.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.4e-51 204.9 186 57.5
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.4e-50 203.0 199 54.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.2e-50 202.6 190 55.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.2e-50 201.1 220 48.6
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.0e-48 197.6 217 48.4
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 8.6e-48 194.5 217 47.5
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 8.6e-48 194.5 216 49.1
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-47 194.1 219 48.4
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.5e-47 193.7 219 48.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.9e-47 193.4 219 48.4
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.5e-47 193.0 219 48.4
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 5.6e-47 191.8 217 49.3
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 5.6e-47 191.8 219 49.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 9.5e-47 191.0 217 47.0
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.2e-46 190.7 229 48.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.6e-46 190.3 219 47.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.6e-46 190.3 219 47.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.7e-46 188.7 205 56.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-45 187.6 205 55.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 3.1e-45 186.0 224 46.4
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 4.0e-45 185.7 217 47.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.5e-44 183.7 220 47.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.4e-44 182.6 244 43.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 4.4e-44 182.2 212 46.2
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 3.7e-43 179.1 219 46.6
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 4.9e-43 178.7 220 46.8
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 8.3e-43 177.9 217 46.5
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.9e-42 176.8 234 42.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.0e-40 171.0 234 41.5
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 4.3e-39 165.6 214 43.5
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.7e-38 162.2 247 40.1
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 6.8e-37 158.3 218 42.7
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 6.8e-37 158.3 111 66.7
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.5e-36 157.1 228 39.9
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-35 153.3 254 39.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.1e-34 149.1 222 41.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 5.4e-34 148.7 252 37.3
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 9.2e-34 147.9 216 36.6
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-33 147.5 240 39.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.7e-33 146.4 225 39.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 4.6e-33 145.6 257 37.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.8e-33 144.8 217 37.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 7.8e-33 144.8 224 35.3
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.3e-32 144.1 219 40.6
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 3.9e-32 142.5 227 37.4
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-32 142.1 222 39.2
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 8.6e-32 141.4 247 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 9.5e-31 137.9 220 39.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.6e-30 137.1 224 36.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.7e-30 135.6 257 35.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 6.2e-30 135.2 152 50.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-29 133.7 257 35.8
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 8.9e-29 131.3 175 43.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 8.9e-29 131.3 175 43.4
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.5e-28 130.6 256 33.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-26 124.0 230 35.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.7e-24 117.1 213 35.2
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-23 113.6 251 31.5
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 4.3e-23 112.5 216 35.2
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 9.6e-23 111.3 222 32.0
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 4.7e-22 109.0 246 32.5
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.1e-21 107.8 203 30.5
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.8e-21 107.1 220 32.3
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.1e-21 106.3 162 38.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 5.2e-21 105.5 184 35.9
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 5.2e-21 105.5 221 33.5
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 5.2e-21 105.5 118 47.5
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 2.0e-20 103.6 128 43.8
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.6e-20 103.2 117 45.3
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 5.8e-20 102.1 135 43.0
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.4e-19 98.6 117 46.2
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.1e-18 97.8 142 41.5
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-18 97.4 117 47.0
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.4e-18 97.4 130 43.1
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 4.2e-18 95.9 116 47.4
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 7.1e-18 95.1 203 31.5
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.1e-18 95.1 110 46.4
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 7.8e-17 91.7 106 45.3
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.8e-14 82.4 125 36.0
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.1e-13 81.3 125 36.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.1e-13 79.7 126 37.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-13 78.6 83 48.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.5e-12 75.9 211 27.0
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.8e-12 75.5 89 41.6
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.6e-12 75.1 190 26.3
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-10 70.1 218 28.9
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.0e-08 63.2 69 44.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-06 57.4 71 39.4


User provided reference genes

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