Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 5.1e-61 237.7 129 100.0
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 9.7e-60 233.4 129 98.4
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 1.6e-30 136.3 127 65.4
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 3.7e-27 125.2 130 61.5
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 1.6e-25 119.8 140 57.1
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 2.9e-24 115.5 131 55.0
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 5.0e-24 114.8 123 58.5
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 1.1e-23 113.6 137 57.7
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 1.1e-23 113.6 153 51.0
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 2.5e-23 112.5 143 51.7
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 2.5e-23 112.5 131 55.0
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 1.2e-22 110.2 136 53.7
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 4.7e-22 108.2 134 53.7
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 2.3e-21 105.9 134 50.7
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 4.0e-21 105.1 138 54.3
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 5.2e-21 104.8 127 53.5
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 1.2e-20 103.6 123 54.5
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 1.5e-20 103.2 135 50.4
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 1.5e-20 103.2 135 50.4
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 5.7e-20 101.3 124 51.6
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 2.2e-19 99.4 131 51.1
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 4.9e-19 98.2 123 52.0
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 1.1e-18 97.1 123 52.0
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 1.4e-18 96.7 113 55.8
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 4.1e-18 95.1 129 48.8
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 4.6e-17 91.7 172 43.0
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 7.8e-17 90.9 169 43.2
Actinidia09218 Actinidia chinensis HOM05D007324 ORTHO05D007884 1.7e-16 89.7 124 56.5
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 1.1e-15 87.0 172 42.4
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 7.3e-15 84.3 119 47.9
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 2.1e-14 82.8 123 46.3
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.8e-14 82.4 124 46.0
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 2.8e-14 82.4 105 54.3
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 3.6e-14 82.0 115 51.3
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 3.6e-14 82.0 115 50.4
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 4.7e-14 81.6 119 53.8
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 4.7e-14 81.6 87 66.7
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 1.1e-13 80.5 119 48.7
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 1.8e-13 79.7 108 50.9
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 1.8e-13 79.7 108 50.9
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 1.8e-13 79.7 123 48.0
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 4.0e-13 78.6 132 43.9
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 5.2e-13 78.2 132 43.2
Nitab4.5_0008428g0010 Nicotiana tabacum HOM05D007324 ORTHO05D007884 5.2e-13 78.2 125 50.4
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 5.2e-13 78.2 121 52.9
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 8.9e-13 77.4 120 45.0
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 1.2e-12 77.0 132 40.9
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 1.2e-12 77.0 123 46.3
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 1.5e-12 76.6 118 46.6
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 2.0e-12 76.3 162 37.7
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 3.4e-12 75.5 94 53.2
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 4.4e-12 75.1 125 44.0
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 5.8e-12 74.7 101 51.5
DCAR_008279 Daucus carota HOM05D007324 ORTHO05D007884 9.8e-12 73.9 125 47.2
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 1.3e-11 73.6 118 52.5
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.3e-11 73.6 128 42.2
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 1.3e-11 73.6 134 44.0
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 1.3e-11 73.6 123 42.3
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 1.7e-11 73.2 115 47.8
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 1.7e-11 73.2 115 47.8
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 2.2e-11 72.8 146 39.0
Peaxi162Scf00460g00044 Petunia axillaris HOM05D007324 ORTHO05D007884 2.2e-11 72.8 126 46.0
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 3.7e-11 72.0 119 43.7
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 6.4e-11 71.2 135 43.0
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 6.4e-11 71.2 135 43.0
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 1.4e-10 70.1 125 43.2
Thecc.03G229800 Theobroma cacao HOM05D007324 ORTHO05D007884 4.1e-10 68.6 129 48.1
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 7.0e-10 67.8 143 40.6
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 9.2e-10 67.4 140 40.0
Dinv28942 Davidia involucrata HOM05D007324 ORTHO05D007884 9.2e-10 67.4 126 43.7
CANSAT21G2393 Cannabis sativa HOM05D007324 ORTHO05D007884 1.6e-09 66.6 134 41.8
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 2.0e-09 66.2 129 41.9
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 2.0e-09 66.2 74 56.8
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 2.0e-09 66.2 52 71.2
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 7.8e-09 64.3 108 47.2
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 1.3e-08 63.5 103 52.4
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 5.0e-08 61.6 87 49.4
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 5.0e-08 61.6 124 39.5
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 5.0e-08 61.6 124 39.5
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 8.6e-08 60.8 98 45.9
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 8.6e-08 60.8 113 42.5
Aqoxy3G02405 Aquilegia oxysepala HOM05D007324 ORTHO05D007884 1.5e-07 60.1 57 64.9
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.5e-07 59.3 87 48.3
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 3.3e-07 58.9 78 50.0
Manes.15G168900 Manihot esculenta HOM05D007324 ORTHO05D007884 4.3e-07 58.5 124 45.2
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 5.6e-07 58.2 128 39.1
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 9.5e-07 57.4 115 40.0
FvH4_5g21820 Fragaria vesca HOM05D031477 ORTHO05D007884 9.5e-07 57.4 120 38.3
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 1.6e-06 56.6 80 47.5
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.8e-06 55.8 87 46.0


User provided reference genes

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