Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-292 1009.2 491 100.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.1e-292 1007.3 491 99.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.0e-242 843.2 497 85.5
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.1e-228 793.9 491 79.6
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.8e-227 790.4 491 78.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.1e-219 765.8 559 71.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.9e-213 745.3 491 73.5
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.1e-200 702.6 494 70.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 4.8e-200 701.4 491 68.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.1e-199 698.7 491 70.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 5.3e-199 698.0 491 69.0
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-197 693.3 491 68.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.7e-197 693.0 562 64.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.3e-196 687.2 503 67.0
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 8.7e-194 680.6 502 66.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.2e-192 676.0 492 69.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.7e-192 675.2 497 70.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 5.3e-191 671.4 491 68.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 7.7e-190 667.5 494 67.8
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-189 666.8 495 68.3
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.3e-189 666.8 494 67.4
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.1e-188 663.7 494 67.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 5.5e-188 661.4 492 67.1
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.0e-186 657.1 503 66.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.3e-186 656.0 491 67.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.0e-186 655.6 495 66.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.1e-186 654.8 493 66.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.4e-185 651.0 493 65.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.7e-185 650.6 491 66.2
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-183 647.1 491 65.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.4e-183 646.7 493 65.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.8e-183 646.4 491 64.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 6.5e-181 637.9 475 68.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.5e-181 637.9 477 67.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.9e-180 636.3 478 67.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.9e-180 636.3 475 66.7
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.7e-179 631.7 497 64.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.7e-178 627.9 495 63.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 8.8e-178 627.5 491 63.7
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.1e-177 627.1 492 63.6
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.2e-176 622.9 492 63.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.4e-175 620.2 492 63.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.4e-175 619.4 470 68.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-174 617.1 491 62.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.5e-174 615.5 493 63.1
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.5e-174 615.5 493 63.1
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.7e-173 613.2 486 64.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.8e-173 612.1 444 67.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.4e-172 610.1 401 73.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.5e-172 608.2 492 61.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-170 602.8 492 61.6
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.3e-170 602.8 463 65.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.5e-169 600.1 463 64.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.7e-168 596.7 743 45.8
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 8.2e-168 594.3 500 61.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.1e-167 594.0 401 71.6
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-166 590.5 460 63.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.6e-166 589.3 448 65.6
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.9e-165 585.9 460 62.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.0e-165 585.1 511 59.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 8.5e-165 584.3 522 60.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 8.5e-165 584.3 488 61.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-164 583.9 406 70.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.5e-164 583.6 404 70.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.2e-164 582.4 492 61.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.0e-162 577.4 522 57.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.4e-162 577.0 401 69.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.4e-162 577.0 462 62.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.0e-162 575.5 501 58.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 6.8e-162 574.7 485 61.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.5e-161 573.5 527 59.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.5e-161 573.5 485 60.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.8e-160 569.3 492 60.6
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.7e-160 568.9 425 65.9
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.3e-160 568.2 520 59.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.3e-160 567.8 408 68.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-159 567.0 492 59.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.0e-159 564.7 408 67.6
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.8e-157 558.9 467 59.1
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 5.0e-157 558.5 400 68.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 6.5e-157 558.1 456 62.3
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.2e-156 555.8 414 67.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.7e-155 552.7 458 59.4
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.8e-154 550.1 559 56.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.3e-154 549.7 514 57.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.5e-153 547.0 475 58.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.5e-153 547.0 468 61.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 9.8e-153 544.3 406 66.3
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.8e-152 542.7 417 66.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.7e-152 542.3 458 58.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 8.3e-152 541.2 402 68.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.3e-152 541.2 455 61.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 5.4e-151 538.5 408 66.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 7.0e-151 538.1 319 81.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.9e-150 535.0 453 62.7
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.6e-149 531.6 397 65.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.5e-148 528.5 452 61.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 7.2e-148 528.1 493 56.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-147 527.3 492 55.9
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.6e-147 525.8 492 55.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.0e-146 524.2 497 55.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.4e-146 523.9 463 58.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.0e-146 522.7 431 61.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.8e-146 521.5 419 60.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.4e-145 519.2 366 69.7
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.7e-145 518.5 406 60.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.5e-145 518.1 431 61.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.9e-144 515.4 431 60.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.4e-143 513.8 477 57.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-143 513.5 408 63.2
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.8e-143 513.5 466 57.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.2e-143 512.7 431 61.3
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.1e-143 512.3 418 60.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.1e-143 512.3 406 61.6
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 5.4e-143 511.9 635 47.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 9.2e-143 511.1 396 62.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.2e-142 510.8 444 57.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-142 510.0 420 60.0
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.0e-142 510.0 420 60.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.9e-142 508.4 386 62.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.9e-142 508.4 429 62.0
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 7.8e-142 508.1 382 64.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.7e-141 506.9 368 67.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 6.6e-141 505.0 406 60.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 9.5e-140 501.1 459 55.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-139 500.4 417 60.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.8e-139 499.6 400 61.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.6e-139 499.2 484 56.0
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-138 497.7 418 59.3
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-138 497.3 421 59.1
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-138 495.0 458 55.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.8e-138 495.0 458 55.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.8e-138 495.0 458 55.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-137 493.4 419 58.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-137 492.3 478 54.6
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 7.5e-137 491.5 478 54.6
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 7.0e-135 485.0 383 60.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.1e-132 477.6 375 63.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.5e-132 477.2 457 55.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.3e-132 476.1 407 59.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.8e-126 454.9 404 55.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.1e-124 451.1 377 61.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.1e-119 432.6 311 66.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.1e-115 420.2 405 51.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.1e-114 416.4 404 50.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.8e-107 393.3 373 53.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.9e-102 375.2 227 82.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.6e-99 366.3 222 79.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 5.3e-98 362.5 354 56.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.1e-95 354.8 268 67.2
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.6e-86 324.3 278 61.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.0e-80 302.8 202 70.8
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.7e-77 292.0 417 47.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-72 276.9 198 65.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.3e-68 263.5 238 57.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.0e-61 240.4 311 42.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-56 224.9 305 43.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.1e-47 195.3 439 32.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-38 165.2 119 71.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-35 154.8 138 57.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.9e-35 153.3 140 59.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.4e-34 149.8 267 39.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.3e-32 144.4 153 50.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 8.0e-30 136.0 286 31.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.0e-29 135.6 118 55.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.7e-27 127.1 607 23.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.8e-26 124.8 101 64.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-20 104.8 134 49.3
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 7.5e-20 102.8 237 35.4
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-14 83.6 115 46.1
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.9e-11 73.6 47 70.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.3e-11 72.8 48 62.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.4e-10 71.2 328 24.1
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.6e-06 57.4 42 59.5


User provided reference genes

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