Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 4.7e-265 917.9 716 100.0
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.5e-263 912.9 716 99.6
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 7.8e-167 591.7 550 70.9
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 5.2e-155 552.4 536 61.8
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 2.2e-153 547.0 554 65.5
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 2.7e-151 540.0 535 63.7
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.1e-149 534.6 445 77.3
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 1.5e-149 534.3 542 63.3
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 8.9e-147 525.0 546 63.9
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 2.0e-146 523.9 462 59.7
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 8.4e-145 518.5 542 59.6
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 2.5e-141 506.9 537 63.1
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.3e-141 506.1 539 58.8
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 7.3e-141 505.4 537 65.0
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 3.6e-140 503.1 539 63.6
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 4.8e-140 502.7 521 61.4
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.4e-139 500.4 539 63.5
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 6.9e-139 498.8 493 66.1
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 9.0e-139 498.4 549 58.1
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.7e-137 494.2 533 62.7
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 2.9e-137 493.4 536 60.6
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 2.9e-137 493.4 531 58.2
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.1e-135 487.3 557 57.5
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.7e-135 486.9 551 58.6
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.7e-135 486.9 551 58.6
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 4.6e-135 486.1 561 56.0
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 2.5e-133 480.3 548 60.0
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 3.3e-133 479.9 530 60.2
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 5.6e-133 479.2 529 59.7
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 4.8e-132 476.1 529 58.8
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 6.2e-132 475.7 520 62.1
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 8.1e-132 475.3 533 49.7
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 5.3e-131 472.6 457 66.1
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 6.9e-131 472.2 532 60.7
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 4.2e-128 463.0 530 61.7
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 7.1e-128 462.2 520 59.8
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 2.1e-127 460.7 470 62.6
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 2.7e-127 460.3 522 59.8
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.6e-127 459.5 532 56.6
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 3.0e-126 456.8 448 64.7
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 2.5e-125 453.8 510 56.1
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 7.4e-125 452.2 435 66.9
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 9.6e-125 451.8 451 62.5
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 1.3e-124 451.4 534 55.6
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.8e-124 450.3 535 46.7
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 6.2e-124 449.1 512 56.4
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 5.3e-123 446.0 536 55.2
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-121 441.4 366 72.7
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 1.4e-120 438.0 527 59.0
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 7.1e-120 435.6 537 45.4
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 9.3e-120 435.3 406 67.0
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 1.2e-119 434.9 520 52.7
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 1.6e-119 434.5 537 56.8
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 6.0e-119 432.6 518 56.9
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 6.0e-119 432.6 537 56.1
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.3e-118 431.4 529 46.1
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 1.8e-118 431.0 514 55.8
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.9e-117 427.6 451 60.3
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.5e-117 427.2 535 54.8
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 2.5e-117 427.2 510 58.4
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 5.7e-117 426.0 585 52.6
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 5.7e-117 426.0 448 59.2
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 7.4e-117 425.6 450 59.3
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 9.6e-117 425.2 533 56.7
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 9.6e-117 425.2 460 61.1
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 4.8e-116 422.9 459 59.5
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 8.2e-116 422.2 520 56.0
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 8.2e-116 422.2 472 59.7
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 1.8e-115 421.0 523 55.6
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 3.1e-115 420.2 472 59.1
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.2e-114 418.3 364 65.9
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.2e-114 418.3 439 59.9
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 1.3e-113 414.8 518 54.6
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.3e-113 414.8 546 49.8
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 2.9e-113 413.7 447 60.2
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 3.8e-113 413.3 584 51.9
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 3.8e-113 413.3 523 55.8
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 5.5e-112 409.5 523 54.9
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 9.3e-112 408.7 339 78.5
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 3.6e-111 406.8 521 49.7
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 8.7e-110 402.1 509 48.7
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 8.7e-110 402.1 468 55.3
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 7.4e-109 399.1 495 56.8
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 2.2e-108 397.5 502 53.2
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 3.7e-108 396.7 512 54.5
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.4e-107 394.8 329 72.9
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 1.5e-106 391.3 487 53.6
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.0e-105 388.7 357 69.2
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 2.9e-105 387.1 455 57.8
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 1.1e-104 385.2 308 77.6
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 2.5e-104 384.0 338 69.2
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 2.1e-103 380.9 440 61.4
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 3.6e-103 380.2 330 69.4
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 6.1e-103 379.4 444 58.1
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 3.0e-102 377.1 366 68.0
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 3.0e-102 377.1 366 68.0
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 2.8e-100 370.5 366 68.0
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 3.7e-100 370.2 366 67.8
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 3.7e-100 370.2 366 67.5
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 2.1e-95 354.4 386 58.5
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 1.4e-91 341.7 374 60.4
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 7.0e-75 286.2 198 67.7
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 4.9e-68 263.5 371 41.8
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 2.9e-60 237.7 541 34.0
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 2.7e-58 231.1 147 73.5
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.8e-58 229.6 196 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 6.6e-49 199.9 378 47.9
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.1e-46 192.6 398 40.7
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 2.0e-37 161.8 388 45.1
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 1.1e-24 119.4 197 65.5
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 6.9e-22 110.2 145 36.6
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.6e-21 108.2 61 77.0
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 5.8e-21 107.1 142 42.3
Sc24g0002010 Simmondsia chinensis HOM05D000001 ORTHO05D000003 6.9e-06 57.0 184 24.5
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 9.0e-06 56.6 33 78.8


User provided reference genes

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