Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.9e-241 838.2 429 100.0
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.4e-240 835.9 429 99.8
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.1e-216 756.5 429 90.2
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.4e-216 755.4 435 89.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 9.6e-213 743.4 430 86.7
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.7e-204 714.9 430 84.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.7e-204 714.9 425 84.5
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 9.0e-203 710.3 430 82.8
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-200 703.4 426 81.5
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.0e-198 696.8 424 82.8
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.0e-198 696.8 425 82.6
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 8.7e-198 693.7 429 79.7
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.5e-197 692.2 429 81.1
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.3e-196 689.9 429 78.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.7e-196 688.3 429 80.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 3.7e-196 688.3 429 79.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.0e-194 682.6 421 81.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 3.8e-193 678.3 422 79.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 4.9e-193 677.9 429 80.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.1e-192 676.8 429 77.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 9.3e-192 673.7 425 79.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-191 672.9 425 80.0
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.6e-191 671.4 432 78.7
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-190 668.7 425 79.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.1e-190 667.9 425 78.8
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 6.7e-190 667.5 425 79.1
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.7e-190 667.2 425 79.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.9e-189 666.0 425 79.1
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.5e-189 665.6 425 78.8
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.3e-189 664.8 429 76.7
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 5.7e-189 664.5 425 79.1
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 7.4e-189 664.1 433 79.7
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-188 662.9 425 77.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 8.2e-188 660.6 425 78.4
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.8e-187 659.4 425 78.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.0e-187 657.1 425 76.7
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 5.9e-186 654.4 425 77.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.0e-185 653.7 425 76.9
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.7e-185 652.9 425 78.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.2e-185 652.5 425 78.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.9e-184 649.4 425 77.2
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.9e-184 649.4 429 75.8
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 9.4e-184 647.1 425 77.4
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 9.4e-184 647.1 429 76.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 4.6e-183 644.8 430 73.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 6.1e-183 644.4 425 75.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 7.9e-183 644.0 422 75.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 7.9e-183 644.0 425 76.7
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.3e-182 642.5 425 75.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 6.7e-182 641.0 428 76.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-181 639.4 425 75.8
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.0e-181 639.4 425 75.5
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.3e-181 638.6 427 76.6
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.8e-180 635.6 429 74.1
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.1e-179 632.1 430 74.0
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 3.1e-179 632.1 425 75.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.1e-179 631.7 441 75.1
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.1e-179 630.6 426 76.1
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.2e-178 630.2 425 74.1
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.0e-178 629.4 422 77.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-178 629.4 422 74.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 3.4e-178 628.6 427 74.9
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.3e-177 626.7 434 74.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.7e-177 626.3 422 74.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.2e-177 625.9 422 74.2
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.2e-177 625.9 429 75.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.4e-176 623.2 459 71.7
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.4e-176 623.2 427 72.6
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.0e-174 617.1 458 71.2
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.0e-174 615.5 426 73.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.1e-174 614.8 429 73.9
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 6.3e-172 607.8 402 76.1
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.1e-171 607.1 427 72.6
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 7.0e-171 604.4 427 71.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.2e-170 603.6 425 72.5
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.5e-170 601.7 427 72.8
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 5.9e-170 601.3 423 74.5
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-169 600.5 464 67.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.0e-169 598.2 429 69.9
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.4e-168 596.7 423 71.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.2e-168 595.1 422 69.2
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.7e-167 592.4 425 71.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.0e-166 590.5 422 69.0
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 6.3e-164 581.3 425 70.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.4e-163 580.1 427 69.8
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 3.5e-162 575.5 426 68.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 4.5e-162 575.1 425 68.5
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 5.9e-162 574.7 430 68.6
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.9e-162 574.7 425 68.9
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 5.9e-162 574.7 426 69.2
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 7.7e-162 574.3 426 69.5
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 7.7e-162 574.3 426 69.0
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.0e-161 573.9 427 68.6
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.9e-161 572.4 427 68.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 3.8e-161 572.0 426 68.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-159 567.0 423 67.4
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.5e-157 560.1 439 68.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 3.3e-157 558.9 383 74.2
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.3e-156 557.0 425 68.9
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 4.8e-156 555.1 426 67.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.8e-155 553.1 426 66.0
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 7.7e-154 547.7 422 64.2
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.8e-153 545.4 324 84.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 6.5e-153 544.7 425 66.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 6.5e-153 544.7 425 66.1
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 8.5e-153 544.3 426 66.7
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 8.5e-153 544.3 426 66.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 4.2e-152 542.0 425 64.9
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 9.4e-152 540.8 425 65.9
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.1e-151 539.7 426 65.7
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 4.7e-151 538.5 426 64.6
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 6.1e-151 538.1 425 66.1
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.4e-150 537.0 426 65.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.8e-150 536.6 425 63.8
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-149 533.9 425 64.7
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.2e-149 533.9 313 84.7
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.4e-147 526.2 381 70.9
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.8e-143 512.7 426 62.4
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 3.6e-143 512.3 386 68.4
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.7e-143 511.9 444 61.3
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.2e-141 507.3 360 69.2
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.4e-134 483.8 427 56.7
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 4.0e-134 482.3 427 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.6e-133 479.6 451 56.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 5.4e-131 471.9 424 56.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 7.3e-128 461.5 390 62.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.2e-124 449.9 433 61.9
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 7.8e-122 441.4 397 61.0
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.7e-119 432.2 430 53.5
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.4e-118 430.6 239 91.2
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.6e-114 415.6 241 87.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.1e-111 406.8 283 70.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-105 386.7 355 60.0
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.4e-102 376.7 356 59.0
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 2.4e-102 376.7 336 58.6
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 3.3e-72 276.6 432 39.6
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-71 273.5 214 66.8
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-68 263.8 325 48.3
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.8e-63 246.1 192 66.7
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.1e-62 243.4 333 41.1
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-58 231.1 374 43.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.8e-57 227.6 194 63.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-51 208.4 194 58.8
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.9e-51 207.6 305 44.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 3.1e-46 190.3 139 64.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 4.1e-46 189.9 251 48.2
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 4.2e-35 153.3 313 33.2
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 4.7e-34 149.8 150 56.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.1e-30 138.7 105 69.5
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.2e-29 135.2 119 55.5
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.2e-27 125.9 125 51.2
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 3.4e-24 117.1 78 73.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 3.4e-24 117.1 78 73.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.2e-23 114.4 76 72.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.1e-18 97.8 66 77.3
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 1.8e-17 94.7 414 21.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.2e-15 87.8 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.3e-12 78.6 57 70.2
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 2.5e-11 74.3 53 75.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.6e-10 70.5 133 36.8
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 4.7e-10 70.1 48 68.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-09 68.2 49 67.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.8e-09 68.2 49 67.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.3e-09 67.8 75 49.3
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 4.0e-09 67.0 44 81.8
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 5.2e-09 66.6 213 26.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.0e-08 64.7 37 75.7
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 26.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 26.3
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 26.3
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.3
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.8
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 9.8e-08 62.4 213 26.3
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.3e-07 62.0 213 26.3
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.3e-07 62.0 213 26.3
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 6.4e-07 59.7 213 25.8
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 4.1e-06 57.0 134 26.1


User provided reference genes

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