Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 6.6e-87 323.9 157 100.0
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.4e-39 166.8 143 62.2
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.7e-30 134.8 131 56.5
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 8.2e-29 131.0 128 53.9
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 8.2e-29 131.0 102 60.8
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.8e-28 129.8 146 49.3
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 2.4e-28 129.4 118 57.6
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 4.1e-28 128.6 124 54.8
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 9.4e-25 117.5 104 59.6
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 4.7e-24 115.2 152 42.8
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 8.0e-24 114.4 117 51.3
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 8.0e-24 114.4 117 51.3
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 1.8e-23 113.2 154 42.2
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.8e-23 113.2 152 46.1
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 5.2e-23 111.7 117 49.6
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 1.2e-22 110.5 108 50.9
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.7e-22 108.2 138 46.4
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.7e-21 105.5 142 45.8
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.5e-19 98.6 99 52.5
Rhsim03G0026600 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.8e-16 89.4 120 42.5
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.8e-15 86.7 94 48.9
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.6e-14 82.8 50 78.0
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 3.4e-14 82.4 50 76.0
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 1.7e-13 80.1 112 42.9
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 8.3e-13 77.8 83 49.4
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.4e-12 77.0 49 69.4
Cpa.g.sc224.1 Carica papaya HOM05D006106 ORTHO05D007662 3.1e-12 75.9 95 46.3
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.4e-12 75.1 100 41.0
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.5e-11 72.4 43 72.1
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 8.6e-10 67.8 77 44.2
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 7.3e-09 64.7 44 65.9
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 7.3e-09 64.7 44 65.9
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.2e-08 63.9 51 60.8
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.2e-08 63.9 39 69.2
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 2.1e-08 63.2 115 37.4
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.1e-08 63.2 70 52.9
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 3.6e-08 62.4 153 27.5
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 4.7e-08 62.0 81 44.4
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 4.7e-08 62.0 41 68.3
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 6.1e-08 61.6 161 26.1
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 6.1e-08 61.6 41 63.4
Cc06_g05840 Coffea canephora HOM05D006106 ORTHO05D007662 1.4e-07 60.5 46 56.5
Dinv22714 Davidia involucrata HOM05D008684 ORTHO05D010796 1.4e-07 60.5 119 29.4
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 2.3e-07 59.7 40 62.5
MD00G1189300 Malus domestica HOM05D008684 ORTHO05D010796 2.3e-07 59.7 155 25.8
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.0e-07 59.3 110 30.0
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.0e-07 59.3 110 30.0
Sabra05G0060600 Salix brachista HOM05D000001 ORTHO05D000003 3.0e-07 59.3 136 27.9
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 4.0e-07 58.9 119 28.6
SMO200G0003 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 6.8e-07 58.2 143 29.4
SMO209G0015 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 6.8e-07 58.2 143 29.4
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 8.9e-07 57.8 120 29.2
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 8.9e-07 57.8 119 31.1
Atru.chr3.1578 Acer truncatum HOM05D008684 ORTHO05D010796 1.2e-06 57.4 119 26.1
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.2e-06 57.4 153 26.8
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.5e-06 57.0 119 29.4
Potri.017G033000 Populus trichocarpa HOM05D008684 ORTHO05D010796 1.5e-06 57.0 119 26.1
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 1.5e-06 57.0 148 28.4
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 2.0e-06 56.6 119 26.1
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 2.0e-06 56.6 116 32.8
Glyma.18G295400 Glycine max HOM05D008684 ORTHO05D010796 2.0e-06 56.6 120 26.7
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.0e-06 56.6 104 30.8
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 2.0e-06 56.6 120 27.5
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.0e-06 56.6 153 26.8
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 2.6e-06 56.2 120 30.8
RcHm_v2.0_Chr4g0384761 Rosa chinensis HOM05D000001 ORTHO05D010280 2.6e-06 56.2 144 27.1
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 3.4e-06 55.8 153 26.1
Potri.005G074000 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.4e-06 55.8 136 27.9
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 4.4e-06 55.5 144 27.8
Pp3c6_26920 Physcomitrium patens HOM05D003056 ORTHO05D037348 4.4e-06 55.5 118 31.4
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 4.4e-06 55.5 136 31.6
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 5.8e-06 55.1 144 27.8
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 5.8e-06 55.1 144 27.8
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 5.8e-06 55.1 120 30.8
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 5.8e-06 55.1 94 33.0
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 5.8e-06 55.1 119 29.4
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 7.5e-06 54.7 127 26.0
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 7.5e-06 54.7 146 28.8
ClCG08G013260 Citrullus lanatus HOM05D000001 ORTHO05D000003 9.8e-06 54.3 134 26.9
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 9.8e-06 54.3 148 28.4
Lalb_Chr10g0091291 Lupinus albus HOM05D008684 ORTHO05D010796 9.8e-06 54.3 119 29.4


User provided reference genes

Program Settings