Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 6.9e-93 344.0 176 100.0
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 6.9e-93 344.0 176 100.0
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 2.8e-78 295.4 176 86.9
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 7.0e-77 290.8 176 84.1
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 1.7e-75 286.2 177 84.2
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 5.0e-75 284.6 174 84.5
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.1e-74 283.5 176 84.7
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 7.2e-74 280.8 176 83.0
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 9.4e-74 280.4 172 83.1
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 9.4e-74 280.4 175 82.3
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 9.4e-74 280.4 175 82.3
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 1.6e-73 279.6 179 82.7
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 2.1e-73 279.3 177 82.5
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 3.6e-73 278.5 169 83.4
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 8.8e-72 273.9 179 79.9
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 2.0e-71 272.7 179 79.9
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.6e-71 272.3 179 78.8
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.4e-71 271.6 179 80.4
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 5.7e-71 271.2 180 76.1
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 7.5e-71 270.8 179 81.0
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.7e-70 269.6 167 82.6
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 2.2e-70 269.2 164 84.1
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.8e-70 268.9 179 79.9
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 3.7e-70 268.5 177 76.8
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 3.7e-70 268.5 177 76.8
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 4.8e-70 268.1 178 78.7
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 6.3e-70 267.7 176 79.5
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 6.3e-70 267.7 176 79.5
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 8.3e-70 267.3 179 77.7
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 4.1e-69 265.0 176 78.4
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.4e-69 264.6 178 78.7
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 7.0e-69 264.2 178 77.5
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.2e-68 263.5 178 74.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.0e-68 262.7 179 78.8
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 2.0e-68 262.7 179 77.1
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 7.7e-68 260.8 182 76.4
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 1.0e-67 260.4 176 77.3
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.3e-67 260.0 178 76.4
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 5.0e-67 258.1 180 77.2
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.0e-67 258.1 176 76.7
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 8.6e-67 257.3 176 75.0
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.9e-66 256.1 178 76.4
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 9.5e-66 253.8 178 74.7
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 2.1e-65 252.7 178 75.3
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.1e-65 251.1 175 74.3
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 8.0e-65 250.8 169 76.3
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.4e-64 250.0 178 74.7
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 4.0e-64 248.4 178 73.6
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 8.8e-64 247.3 174 74.7
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 8.8e-64 247.3 179 75.4
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 1.2e-63 246.9 182 72.5
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 3.4e-63 245.4 179 71.5
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 4.4e-63 245.0 179 70.9
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 2.2e-62 242.7 179 70.4
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.8e-62 242.3 176 72.7
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 4.9e-62 241.5 181 71.3
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.4e-61 239.2 175 71.4
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.4e-61 239.2 175 71.4
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 4.1e-61 238.4 169 75.7
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 5.4e-61 238.0 173 73.4
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 5.4e-61 238.0 178 68.0
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 1.2e-60 236.9 174 70.1
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 1.6e-60 236.5 176 71.6
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 3.5e-60 235.3 176 69.3
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 4.5e-60 235.0 165 73.9
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 4.5e-60 235.0 166 69.9
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 7.8e-60 234.2 170 68.8
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 7.8e-60 234.2 180 71.1
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 1.0e-59 233.8 170 68.8
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.3e-59 233.4 176 70.5
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.7e-59 233.0 171 71.9
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.7e-59 233.0 181 69.1
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 2.9e-59 232.3 170 68.2
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 5.0e-59 231.5 177 69.5
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 5.0e-59 231.5 177 68.9
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 8.6e-59 230.7 147 80.3
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.5e-58 229.9 135 87.4
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 2.5e-58 229.2 168 70.2
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.5e-58 229.2 208 63.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 3.3e-58 228.8 168 72.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 3.3e-58 228.8 178 71.3
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 4.3e-58 228.4 164 72.0
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 7.3e-58 227.6 179 70.4
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 6.1e-57 224.6 182 68.7
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 1.4e-56 223.4 236 56.8
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.2e-55 220.3 176 68.2
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.5e-55 219.9 177 69.5
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.3e-54 216.9 137 80.3
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.9e-54 215.7 158 72.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 3.7e-54 215.3 137 80.3
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.0e-52 209.5 166 68.7
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 3.5e-52 208.8 138 78.3
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.7e-51 206.5 133 78.2
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.1e-50 203.8 183 61.7
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.1e-50 203.8 149 73.2
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.5e-50 203.4 137 76.6
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 4.3e-50 201.8 177 65.5
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 1.2e-49 200.3 179 62.0
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.6e-49 199.9 160 65.6
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.6e-49 199.9 157 65.6
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 2.8e-49 199.1 168 63.7
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 3.6e-49 198.7 157 65.0
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 3.6e-49 198.7 157 65.0
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 4.7e-49 198.4 157 65.0
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 6.2e-49 198.0 158 69.0
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 4.0e-48 195.3 130 76.9
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.3e-46 190.3 125 74.4
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 8.3e-46 187.6 160 63.1
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 9.2e-45 184.1 107 86.0
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.6e-44 183.3 176 60.8
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 3.5e-44 182.2 112 80.4
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 9.5e-42 174.1 176 59.7
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.5e-39 166.8 146 61.0
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 3.7e-38 162.2 171 55.0
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.1e-37 160.6 176 52.3
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.1e-37 160.6 143 62.2
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 4.1e-37 158.7 175 54.9
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 5.2e-32 141.7 146 54.8
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 9.9e-31 137.5 111 61.3
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.5e-26 122.9 150 47.3
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 6.2e-25 118.2 99 61.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 1.1e-24 117.5 120 57.5
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 1.4e-24 117.1 161 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.8e-24 116.7 101 60.4
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 2.6e-23 112.8 80 72.5
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 7.6e-23 111.3 72 81.9
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-19 100.1 83 63.9
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 3.9e-19 99.0 85 61.2
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-17 91.3 138 43.5
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 8.4e-14 81.3 60 70.0
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.3e-11 73.2 54 61.1
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.2e-07 60.8 117 37.6
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 1.5e-07 60.5 43 76.7
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 1.7e-06 57.0 35 71.4


User provided reference genes

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