Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 8.2e-73 276.9 138 100.0
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 8.2e-73 276.9 138 100.0
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 3.9e-67 258.1 138 92.0
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 9.7e-66 253.4 139 90.6
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 9.7e-66 253.4 139 90.6
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 8.2e-65 250.4 138 89.1
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 9.1e-64 246.9 138 88.4
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 7.7e-63 243.8 138 86.2
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.7e-62 242.7 138 86.2
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 3.8e-62 241.5 138 87.0
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 5.0e-62 241.1 138 87.7
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 5.0e-62 241.1 138 82.6
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.1e-61 240.0 138 87.0
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.1e-61 240.0 138 87.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 3.2e-61 238.4 138 86.2
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.2e-61 238.0 136 86.0
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.2e-60 236.5 138 82.6
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.6e-60 236.1 138 85.5
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 1.6e-60 236.1 138 84.8
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.1e-60 235.7 138 84.1
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 3.6e-60 235.0 138 82.6
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 4.7e-60 234.6 138 82.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.7e-60 234.6 138 84.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 6.1e-60 234.2 138 82.6
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.0e-59 233.4 138 81.9
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-59 233.0 138 79.7
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 1.4e-59 233.0 137 83.9
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 2.3e-59 232.3 136 82.4
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.3e-59 232.3 139 80.6
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 3.0e-59 231.9 136 82.4
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 3.9e-59 231.5 138 82.6
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 5.1e-59 231.1 138 81.2
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.1e-59 231.1 138 81.2
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 6.7e-59 230.7 138 79.0
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 6.7e-59 230.7 138 80.4
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 8.8e-59 230.3 139 82.0
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 8.8e-59 230.3 138 81.9
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.1e-58 229.9 136 83.1
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.1e-58 229.9 138 79.7
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.0e-58 229.2 138 79.7
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 2.0e-58 229.2 138 81.9
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.0e-58 229.2 138 78.3
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.0e-58 229.2 138 78.3
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.0e-58 229.2 138 81.9
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 3.3e-58 228.4 139 82.7
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 4.4e-58 228.0 139 82.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 4.4e-58 228.0 138 81.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 5.7e-58 227.6 139 81.3
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 5.7e-58 227.6 138 81.9
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 5.7e-58 227.6 138 80.4
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 7.4e-58 227.3 140 82.1
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 9.7e-58 226.9 138 80.4
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.7e-57 226.1 138 80.4
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.7e-57 226.1 136 82.4
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.7e-57 226.1 139 77.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.7e-57 224.9 134 82.1
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 3.7e-57 224.9 138 79.7
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 3.7e-57 224.9 138 77.5
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.7e-57 224.9 138 82.6
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 4.8e-57 224.6 147 76.9
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.1e-56 223.4 131 79.4
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.4e-56 223.0 138 76.8
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.8e-56 222.6 137 77.4
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.4e-56 222.2 138 79.7
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 5.3e-56 221.1 138 78.3
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.3e-56 221.1 138 79.0
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 7.0e-56 220.7 138 78.3
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 7.0e-56 220.7 135 80.0
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.5e-55 219.5 138 79.0
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.0e-55 219.2 135 79.3
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.0e-55 219.2 134 79.1
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 4.5e-55 218.0 132 79.5
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 5.9e-55 217.6 138 76.8
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-54 216.5 138 76.8
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.7e-54 216.1 132 80.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 2.9e-54 215.3 138 75.4
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.9e-54 215.3 138 77.5
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 8.5e-54 213.8 138 77.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 8.5e-54 213.8 138 77.5
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.1e-53 213.4 138 75.4
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.5e-53 213.0 138 78.3
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.5e-53 213.0 138 77.5
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.2e-52 209.9 143 72.0
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.6e-52 209.5 138 76.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 4.7e-52 208.0 131 77.1
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.0e-51 206.8 138 76.1
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 3.9e-51 204.9 138 72.5
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 8.8e-51 203.8 139 73.4
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.6e-50 202.2 139 71.2
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.3e-50 201.8 146 71.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.3e-50 201.8 146 71.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.3e-50 201.8 146 71.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.3e-50 201.8 146 71.2
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.4e-50 201.4 138 70.3
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 2.8e-49 198.7 118 77.1
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.4e-48 196.4 114 78.1
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 2.4e-48 195.7 115 78.3
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.4e-48 195.7 133 69.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 5.9e-47 191.0 114 77.2
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.0e-46 190.3 115 75.7
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 1.7e-46 189.5 114 76.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.7e-46 189.5 115 75.7
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.2e-46 189.1 115 74.8
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 5.0e-46 188.0 133 68.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 5.0e-46 188.0 133 68.4
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 6.5e-46 187.6 108 78.7
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 6.5e-46 187.6 108 78.7
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 8.5e-46 187.2 120 79.2
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.9e-45 186.0 114 73.7
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 3.2e-45 185.3 108 77.8
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 3.2e-45 185.3 108 77.8
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 3.2e-45 185.3 108 77.8
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 5.5e-45 184.5 114 80.7
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 9.4e-45 183.7 143 63.6
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.2e-44 183.3 127 68.5
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.2e-44 183.3 120 69.2
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 3.6e-44 181.8 118 69.5
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.8e-43 179.5 133 67.7
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.5e-42 176.4 134 67.9
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.2e-39 166.8 98 77.6
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.3e-38 163.3 138 62.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 5.0e-38 161.4 93 75.3
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.7e-36 155.6 134 56.7
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 8.0e-36 154.1 119 72.3
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 4.9e-33 144.8 86 74.4
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.6e-31 139.8 129 58.9
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.0e-31 139.4 81 87.7
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 2.5e-29 132.5 123 58.5
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 9.5e-29 130.6 112 57.1
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.1e-28 129.4 76 88.2
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.4e-27 126.7 123 50.4
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 3.4e-26 122.1 136 55.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 9.8e-26 120.6 59 89.8
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.2e-25 119.4 72 72.2
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 2.3e-22 109.4 76 76.3
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 3.9e-22 108.6 82 69.5
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.9e-21 106.3 84 61.9
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 3.3e-21 105.5 100 53.0
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 3.6e-20 102.1 70 67.1
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 6.1e-20 101.3 151 39.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.0e-19 100.5 59 71.2
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 2.4e-16 89.4 79 59.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.7e-15 85.9 59 66.1
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 6.0e-15 84.7 85 52.9
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 5.6e-13 78.2 132 36.4
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 7.3e-13 77.8 86 57.0
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 6.2e-12 74.7 139 40.3
CSS0036753 Camellia sinensis var. sinensis HOM05D008986 ORTHO05D113366 1.3e-09 67.0 41 87.8
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 2.2e-09 66.2 77 45.5


User provided reference genes

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