Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 2.1e-103 379.0 188 100.0
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.1e-96 356.7 186 95.7
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-94 350.1 188 94.1
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-94 350.1 188 94.1
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-94 350.1 188 94.1
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-94 350.1 188 94.1
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 3.9e-94 348.2 188 93.1
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 3.9e-94 348.2 188 93.1
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 1.1e-93 346.7 188 93.6
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.6e-93 345.5 186 94.6
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 5.7e-93 344.4 186 92.5
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 9.7e-93 343.6 188 91.0
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 9.7e-93 343.6 188 91.0
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-92 342.0 188 91.0
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.8e-92 342.0 188 91.0
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.3e-92 340.9 188 92.0
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-91 339.7 188 92.6
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.8e-91 339.3 188 92.0
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.8e-91 339.3 188 92.0
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.8e-91 339.3 188 92.0
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.8e-91 339.3 186 92.5
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.8e-91 339.3 188 92.6
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.8e-91 339.3 191 91.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 3.1e-91 338.6 188 92.6
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 3.1e-91 338.6 188 92.6
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 3.1e-91 338.6 188 92.6
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 3.1e-91 338.6 188 92.6
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 5.3e-91 337.8 185 90.8
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.0e-90 335.9 188 92.0
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.0e-90 335.9 188 92.0
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.6e-90 335.5 187 90.4
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.6e-90 335.5 187 90.4
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.6e-90 335.5 188 92.6
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.6e-90 335.5 188 92.6
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 5.9e-90 334.3 188 91.5
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 2.2e-89 332.4 184 90.2
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.2e-88 328.6 186 90.3
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 7.2e-88 327.4 181 92.3
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.1e-87 324.3 188 88.8
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 6.1e-87 324.3 192 87.0
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 2.3e-86 322.4 186 90.3
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 7.4e-85 317.4 189 87.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.3e-84 316.6 188 86.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 2.8e-84 315.5 184 88.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 5.3e-83 311.2 174 92.0
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.5e-82 308.5 173 91.3
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 7.7e-82 307.4 185 85.9
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.3e-81 306.6 174 90.8
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 8.5e-81 303.9 185 85.9
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.1e-79 299.3 168 91.7
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.7e-79 298.9 189 84.7
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 4.7e-79 298.1 156 96.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 6.1e-79 297.7 188 81.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 5.7e-77 291.2 188 81.9
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.2e-74 283.5 188 79.8
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.1e-71 272.7 161 88.8
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 8.0e-71 270.8 161 88.2
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 8.8e-70 267.3 155 89.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 3.1e-67 258.8 161 83.2
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 3.2e-64 248.8 148 85.8
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 4.2e-64 248.4 169 81.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 4.5e-58 228.4 151 79.5
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 4.5e-58 228.4 129 89.9
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.9e-56 223.0 191 61.3
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 4.4e-53 211.8 133 84.2
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.8e-53 210.7 135 77.8
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 7.0e-51 204.5 115 89.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.7e-49 199.9 180 64.4
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.6e-47 193.4 179 60.9
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 2.1e-47 193.0 183 61.7
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 2.0e-45 186.4 112 85.7
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 9.8e-45 184.1 184 59.2
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 9.8e-45 184.1 184 59.2
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.9e-44 182.6 184 58.7
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.9e-44 182.6 184 58.7
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.3e-40 168.7 175 58.9
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.6e-39 165.6 107 81.3
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.2e-36 156.4 110 76.4
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 3.7e-36 155.6 86 89.5
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-35 154.1 110 75.5
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.2e-35 152.5 85 87.1
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 9.2e-35 151.0 72 100.0
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-34 150.6 84 88.1
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 3.0e-33 146.0 97 78.4
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 3.9e-33 145.6 107 72.9
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.5e-32 143.7 72 95.8
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 2.5e-32 142.9 74 94.6
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 7.3e-32 141.4 68 98.5
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 7.3e-32 141.4 68 98.5
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-30 137.5 77 88.3
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.8e-30 136.7 74 87.8
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.6e-29 131.3 109 67.0
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.9e-28 128.6 109 66.1
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.8e-26 121.3 69 81.2
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.1e-25 118.6 70 80.0
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.6e-25 117.9 74 78.4
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.6e-23 112.5 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.4e-22 110.5 186 37.1
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.1e-22 109.4 66 78.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.2e-22 108.6 61 85.2
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-21 106.7 71 76.1
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.9e-20 102.1 66 69.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-19 100.1 55 85.5
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 2.4e-19 99.8 68 79.4
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.6e-17 91.7 76 67.1
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.6e-16 87.8 49 83.7
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 5.3e-14 82.0 50 80.0
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.3e-12 77.4 53 71.7
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-12 77.0 49 75.5
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.8e-12 75.9 71 56.3
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 7.1e-11 71.6 42 83.3
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.6e-10 68.9 36 88.9
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 6.0e-10 68.6 63 61.9
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.0e-10 68.6 60 68.3
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 7.9e-10 68.2 54 72.2
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 2.3e-09 66.6 41 75.6
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 5.1e-09 65.5 34 88.2
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 8.7e-09 64.7 36 77.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.1e-08 64.3 31 100.0


User provided reference genes

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