Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 0.0e+00 1190.3 607 100.0
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 0.0e+00 1179.9 607 99.2
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 1.2e-293 1012.7 606 84.2
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.9e-283 978.8 612 82.0
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.1e-278 963.0 610 81.5
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 4.6e-261 904.4 605 76.5
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 5.6e-259 897.5 603 75.8
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 8.4e-255 883.6 604 74.7
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 2.4e-254 882.1 606 73.8
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 9.3e-254 880.2 606 74.3
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 2.1e-253 879.0 606 72.8
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 8.1e-250 867.1 605 73.9
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.1e-249 866.7 606 70.8
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 1.8e-249 865.9 606 73.8
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 9.0e-249 863.6 606 70.5
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 2.0e-248 862.4 605 72.9
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 4.5e-248 861.3 606 72.3
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 2.9e-247 858.6 609 72.1
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 7.9e-245 850.5 609 71.6
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.8e-244 849.4 644 66.8
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 2.5e-243 845.5 606 71.9
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.6e-242 842.8 606 71.1
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 8.2e-242 840.5 606 71.3
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 2.4e-241 839.0 609 72.2
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 3.1e-241 838.6 607 70.8
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 5.3e-241 837.8 604 72.0
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 1.2e-240 836.6 607 71.2
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 2.0e-240 835.9 608 70.7
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 7.1e-238 827.4 602 71.9
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 7.1e-238 827.4 605 71.2
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 9.3e-238 827.0 628 69.3
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 1.2e-237 826.6 606 71.5
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 2.1e-237 825.9 610 71.0
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 1.6e-234 816.2 603 70.3
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 4.8e-234 814.7 606 70.6
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 1.4e-233 813.1 613 69.3
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 1.8e-233 812.8 623 68.7
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 2.4e-233 812.4 604 70.9
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-232 810.1 581 71.1
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.6e-232 808.9 608 69.4
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 4.5e-232 808.1 604 70.9
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 1.7e-231 806.2 608 68.9
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.8e-231 805.1 608 69.2
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 1.4e-230 803.1 606 67.7
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 9.4e-230 800.4 619 69.5
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.2e-229 800.0 614 68.6
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 2.1e-229 799.3 605 67.4
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 3.0e-228 795.4 605 67.3
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 9.7e-227 790.4 578 70.8
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 9.7e-227 790.4 610 68.5
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 2.4e-225 785.8 605 67.4
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 9.1e-225 783.9 606 67.5
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 9.1e-225 783.9 628 66.6
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 2.0e-224 782.7 605 67.4
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.5e-224 781.6 628 66.4
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 1.7e-223 779.6 604 68.4
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 2.2e-223 779.2 606 63.4
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 3.2e-222 775.4 602 67.1
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 1.6e-221 773.1 602 66.4
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 3.9e-220 768.5 602 66.1
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 5.1e-220 768.1 605 66.1
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 3.7e-218 761.9 605 65.3
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 1.8e-217 759.6 601 65.7
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 1.8e-217 759.6 601 65.7
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 1.8e-217 759.6 601 65.7
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 3.1e-217 758.8 602 65.8
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.5e-216 756.5 586 67.7
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 3.8e-215 751.9 602 65.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.1e-214 750.4 553 70.7
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 3.0e-212 742.3 609 64.4
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 5.2e-212 741.5 631 62.3
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 2.0e-211 739.6 611 66.3
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.4e-209 733.4 613 63.1
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 5.3e-209 731.5 602 64.6
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 7.0e-209 731.1 513 74.9
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 4.5e-208 728.4 512 73.6
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 2.2e-207 726.1 578 67.6
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 2.5e-206 722.6 535 68.8
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 2.1e-205 719.5 586 66.7
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 3.6e-205 718.8 606 64.4
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 4.1e-201 705.3 612 61.8
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 4.1e-201 705.3 493 77.3
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 1.1e-198 697.2 605 60.7
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 8.0e-197 691.0 485 73.4
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 3.4e-195 685.6 608 60.9
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 3.3e-166 589.3 546 59.7
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 2.3e-159 566.6 441 69.2
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 9.6e-150 534.6 440 61.6
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 3.1e-148 529.6 406 68.7
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 6.2e-141 505.4 655 45.0
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.2e-137 492.7 643 42.1
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 9.3e-137 491.5 653 43.3
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 6.0e-136 488.8 401 62.6
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 2.8e-133 479.9 418 62.0
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 2.6e-131 473.4 359 70.2
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 8.7e-127 458.4 354 70.1
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 5.7e-126 455.7 354 64.7
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.1e-125 453.8 354 70.1
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.1e-116 422.9 630 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 6.1e-112 409.1 598 39.3
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 2.5e-97 360.5 352 57.1
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.1e-92 345.1 399 48.6
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 3.1e-84 317.0 363 51.2
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 4.5e-75 286.6 753 30.5
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 6.8e-71 272.7 158 82.3
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 9.2e-68 262.3 689 30.0
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 7.8e-67 259.2 160 76.2
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.3e-66 258.5 674 30.0
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 1.5e-65 255.0 159 78.6
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 1.5e-62 245.0 172 69.2
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 5.2e-55 219.9 296 46.3
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 5.2e-55 219.9 204 55.9
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 3.4e-54 217.2 228 50.4
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 4.4e-54 216.9 176 59.1
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 3.7e-53 213.8 136 75.0
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 5.1e-50 203.4 117 81.2
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 8.6e-50 202.6 291 44.0
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 7.3e-49 199.5 262 44.7
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-47 195.7 184 57.6
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-47 195.7 184 57.6
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.0e-46 191.4 117 74.4
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 1.3e-42 178.7 235 43.8
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 3.6e-40 170.6 96 84.4
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 4.7e-40 170.2 161 57.8
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 1.4e-39 168.7 125 67.2
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.5e-38 165.2 117 64.1
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 5.4e-36 156.8 114 69.3
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 1.0e-34 152.5 145 57.9
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 2.1e-32 144.8 408 28.7
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 9.0e-31 139.4 130 53.1
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 5.8e-30 136.7 93 66.7
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.7e-26 125.2 87 72.4
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 7.3e-25 119.8 83 68.7
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 2.4e-23 114.8 264 34.1
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 6.2e-16 90.1 223 24.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 1.8e-15 88.6 220 27.7
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.8e-15 88.6 220 27.7
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 2.2e-13 81.6 347 23.6
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.5e-12 78.2 223 25.1
BolC9t57946H Brassica oleracea HOM05D005251 ORTHO05D006680 4.2e-12 77.4 51 64.7
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 5.5e-12 77.0 216 26.4
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 7.1e-12 76.6 223 25.1
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 7.1e-12 76.6 231 25.5
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 9.3e-12 76.3 53 73.6
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 9.3e-12 76.3 223 25.1
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 1.2e-11 75.9 234 25.6
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 2.1e-11 75.1 223 24.2
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 2.1e-11 75.1 226 25.2
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 2.7e-11 74.7 223 25.1
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 4.6e-11 73.9 196 28.6
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 6.0e-11 73.6 219 26.9
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 6.0e-11 73.6 247 24.3
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 7.9e-11 73.2 237 24.1
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.3e-10 72.4 42 83.3
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 1.8e-10 72.0 224 25.0
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.8e-10 72.0 220 25.9
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 6.7e-10 70.1 224 23.7
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.1e-09 69.3 220 25.5
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.1e-09 69.3 161 29.2
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.5e-09 68.9 220 25.5
C06p07130 Brassica napus HOM05D005251 ORTHO05D006680 1.9e-09 68.6 41 68.3
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 5.7e-09 67.0 157 29.3
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 4.8e-08 63.9 225 25.3
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 8.2e-08 63.2 36 72.2
BolC6t35802H Brassica oleracea HOM05D005251 ORTHO05D006680 9.0e-07 59.7 55 56.4
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 5.9e-06 57.0 123 28.5


User provided reference genes

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