Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047509 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 7.6e-77 290.4 146 100.0
CSS0035071 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 3.9e-73 278.1 146 96.6
CSS0029028 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 6.2e-63 244.2 146 87.7
CSS0015116 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.4e-59 233.0 146 83.6
CSS0050269 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.2e-58 229.9 146 84.2
CSS0010138 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 5.6e-56 221.1 130 88.5
CSS0036493 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.1e-51 206.8 146 79.5
CSS0005489 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 1.2e-45 186.8 130 72.3
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 2.0e-37 159.5 131 63.4
CSS0037529 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 3.8e-36 155.2 146 63.7
Lj1A1235G87 Lonicera japonica HOM05D000570 ORTHO05D001174 2.3e-33 146.0 131 62.6
PGSC0003DMG400016709 Solanum tuberosum HOM05D000570 ORTHO05D001174 6.7e-33 144.4 131 61.8
Solyc02g081070.4 Solanum lycopersicum HOM05D000570 ORTHO05D001174 1.9e-32 142.9 131 60.3
CAN.G1014.44 Capsicum annuum HOM05D000570 ORTHO05D001174 3.3e-32 142.1 131 61.1
Hma1.2p1_0298F.1_g117490 Hydrangea macrophylla HOM05D000570 ORTHO05D001174 6.3e-31 137.9 133 63.2
Sopen02g025740 Solanum pennellii HOM05D000570 ORTHO05D001174 5.3e-30 134.8 131 58.0
GSVIVG01004806001 Vitis vinifera HOM05D000570 ORTHO05D001174 2.0e-29 132.9 130 60.8
TAR626G0159 Trochodendron aralioides HOM05D000570 ORTHO05D001174 2.6e-29 132.5 131 55.7
vmacro15803 Vaccinium macrocarpon HOM05D000570 ORTHO05D001174 2.2e-28 129.4 124 61.3
Duzib235G1179 Durio zibethinus HOM05D000570 ORTHO05D001174 2.5e-27 125.9 131 56.5
ECA236G0302 Erigeron canadensis HOM05D000570 ORTHO05D001174 9.4e-27 124.0 130 52.3
MSTRG.14627 Avicennia marina HOM05D000570 ORTHO05D001174 2.1e-26 122.9 130 52.3
Lsat_1_v5_gn_7_15161 Lactuca sativa HOM05D000570 ORTHO05D001174 3.6e-26 122.1 130 52.3
Atru.chr10.2275 Acer truncatum HOM05D000570 ORTHO05D001174 4.7e-26 121.7 126 54.0
Cpa.g.sc152.51 Carica papaya HOM05D000570 ORTHO05D001174 4.7e-26 121.7 124 55.6
HanXRQChr05g0129311 Helianthus annuus HOM05D000570 ORTHO05D001174 6.1e-26 121.3 130 51.5
DCAR_024985 Daucus carota HOM05D000570 ORTHO05D001174 1.4e-25 120.2 132 55.3
Sabra11G0008000 Salix brachista HOM05D000570 ORTHO05D001174 1.5e-24 116.7 121 56.2
Lalb_Chr20g0118921 Lupinus albus HOM05D000570 ORTHO05D001174 2.0e-24 116.3 125 52.8
TPR.G12988 Trifolium pratense HOM05D000570 ORTHO05D001174 2.0e-24 116.3 126 55.6
Cc09_g01270 Coffea canephora HOM05D000570 ORTHO05D001174 2.6e-24 115.9 129 55.8
Rhsim02G0105000 Rhododendron simsii HOM05D000570 ORTHO05D001174 7.4e-24 114.4 131 54.2
Actinidia39260 Actinidia chinensis HOM05D000570 ORTHO05D001174 4.8e-23 111.7 130 51.5
Gorai.010G183400 Gossypium raimondii HOM05D000570 ORTHO05D001174 3.1e-22 109.0 128 53.9
COL.COLO4_31827 Corchorus olitorius HOM05D000570 ORTHO05D001174 4.1e-22 108.6 131 48.9
Nitab4.5_0012576g0010 Nicotiana tabacum HOM05D000570 ORTHO05D001174 5.3e-22 108.2 129 50.4
Thecc.06G227500 Theobroma cacao HOM05D000570 ORTHO05D001174 7.0e-22 107.8 131 51.1
QL05p072009 Quercus lobata HOM05D000570 ORTHO05D001174 9.1e-22 107.5 128 51.6
Gohir.A06G150700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.5e-21 106.7 128 52.3
Gohir.D06G156900 Gossypium hirsutum HOM05D000570 ORTHO05D001174 2.0e-21 106.3 128 53.1
MD10G1326000 Malus domestica HOM05D000570 ORTHO05D001174 2.0e-21 106.3 129 51.2
CANSAT56G2530 Cannabis sativa HOM05D000570 ORTHO05D001174 2.6e-21 105.9 130 48.5
Migut.H01588 Erythranthe guttata HOM05D000570 ORTHO05D001174 3.4e-21 105.5 130 46.2
MD05G1351900 Malus domestica HOM05D000570 ORTHO05D001174 3.4e-21 105.5 129 49.6
Nitab4.5_0001409g0210 Nicotiana tabacum HOM05D000570 ORTHO05D001174 2.2e-20 102.8 118 54.2
Peaxi162Scf00178g00216 Petunia axillaris HOM05D000570 ORTHO05D001174 2.9e-20 102.4 120 52.5
Potri.011G010500 Populus trichocarpa HOM05D000570 ORTHO05D001174 3.8e-20 102.1 114 51.8
Manes.16G003200 Manihot esculenta HOM05D000570 ORTHO05D001174 8.5e-20 100.9 105 54.3
SGA_v2.0_scaffold49G18250 Striga asiatica HOM05D000570 ORTHO05D001174 8.5e-20 100.9 118 50.8
Potri.004G005301 Populus trichocarpa HOM05D000570 ORTHO05D001174 2.5e-19 99.4 124 48.4
FvH4_3g01460 Fragaria vesca HOM05D000570 ORTHO05D001174 4.2e-19 98.6 109 52.3
HanXRQChr15g0470551 Helianthus annuus HOM05D000570 ORTHO05D001174 5.5e-19 98.2 130 44.6
SGA_v2.0_scaffold89G27483 Striga asiatica HOM05D000570 ORTHO05D001174 1.6e-18 96.7 137 45.3
FAN21G0433 Fragaria x ananassa HOM05D000570 ORTHO05D001174 3.6e-18 95.5 109 51.4
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 4.7e-18 95.1 129 47.3
Glyma.15G111600 Glycine max HOM05D000570 ORTHO05D001174 4.7e-18 95.1 125 47.2
Hund21434 Selenicereus undatus HOM05D000570 ORTHO05D001174 8.0e-18 94.4 130 43.8
QL02p081725 Quercus lobata HOM05D017261 ORTHO05D015793 2.3e-17 92.8 75 66.7
Lsat_1_v5_gn_0_22980 Lactuca sativa HOM05D000570 ORTHO05D001174 3.0e-17 92.4 116 51.7
Phvul.006G146100 Phaseolus vulgaris HOM05D000570 ORTHO05D001174 3.9e-17 92.0 125 45.6
Sc05g0009430 Simmondsia chinensis HOM05D000570 ORTHO05D001174 8.8e-17 90.9 130 48.5
TAR624G1309 Trochodendron aralioides HOM05D000570 ORTHO05D001174 8.8e-17 90.9 108 49.1
Aqoxy1G03467 Aquilegia oxysepala HOM05D000570 ORTHO05D001174 2.6e-16 89.4 121 47.1
PSO832G2605 Papaver somniferum HOM05D000570 ORTHO05D001174 2.6e-16 89.4 133 40.6
PSO210G6440 Papaver somniferum HOM05D000570 ORTHO05D001174 3.3e-16 89.0 133 40.6
Haze_06852 Corylus avellana HOM05D000570 ORTHO05D001174 9.7e-16 87.4 112 48.2
Sabra04G0002700 Salix brachista HOM05D000570 ORTHO05D001174 1.3e-15 87.0 122 43.4
CsaV3_1G046110 Cucumis sativus L. HOM05D000570 ORTHO05D001174 3.7e-15 85.5 128 41.4
Os02g0190500 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 3.7e-15 85.5 135 38.5
Gohir.A10G011100 Gossypium hirsutum HOM05D000570 ORTHO05D001174 6.3e-15 84.7 131 43.5
MBI19_g45795_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D001174 6.3e-15 84.7 96 49.0
RcHm_v2.0_Chr5g0002301 Rosa chinensis HOM05D000570 ORTHO05D001174 6.3e-15 84.7 116 48.3
PGR004G0535 Punica granatum HOM05D000570 ORTHO05D001174 1.4e-14 83.6 121 42.1
THA.LOC104813393 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 3.1e-14 82.4 126 44.4
CiPaw.10G074100 Carya illinoinensis HOM05D000570 ORTHO05D001174 4.1e-14 82.0 110 46.4
Lalb_Chr15g0087741 Lupinus albus HOM05D000570 ORTHO05D001174 4.1e-14 82.0 125 44.0
Medtr2g024330 Medicago truncatula HOM05D000570 ORTHO05D001174 5.3e-14 81.6 111 49.5
Gorai.011G011800 Gossypium raimondii HOM05D000570 ORTHO05D001174 9.1e-14 80.9 131 42.7
Zm00001eb234920 Zea mays HOM05D000570 ORTHO05D001174 9.1e-14 80.9 139 35.3
CDE04G0812 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 5.9e-13 78.2 129 40.3
Ah.09g234550 Amaranthus hybridus HOM05D000570 ORTHO05D001174 7.7e-13 77.8 114 41.2
ATR0686G143 Amborella trichopoda HOM05D000570 ORTHO05D015793 1.3e-12 77.0 136 41.2
THA.LOC104812980 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 1.3e-12 77.0 125 42.4
Gohir.D10G010700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 2.2e-12 76.3 131 42.0
CiPaw.09G097400 Carya illinoinensis HOM05D000570 ORTHO05D001174 1.1e-11 73.9 111 43.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.5e-11 73.6 142 35.9
FAN25G3172 Fragaria x ananassa HOM05D000570 ORTHO05D001174 2.5e-11 72.8 108 46.3
Lj6g0005851 Lotus japonicus HOM05D000570 ORTHO05D001174 3.2e-11 72.4 125 44.0
Prupe.4G015700 Prunus persica HOM05D000570 ORTHO05D001174 3.2e-11 72.4 115 44.3
TWI38G1871 Tripterygium wilfordii HOM05D000570 ORTHO05D001174 4.2e-11 72.0 112 45.5
Ca_00690_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 5.5e-11 71.6 110 47.3
Zm00001eb275550 Zea mays HOM05D000570 ORTHO05D001174 7.2e-11 71.2 135 38.5
CDE06G1424 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.7e-10 68.6 127 38.6
Psat1g175520 Pisum sativum HOM05D000570 ORTHO05D001174 1.4e-09 67.0 111 45.0
VMungo0540G1870 Vigna mungo HOM05D000570 ORTHO05D001174 3.0e-09 65.9 128 39.1
Glyma.09G007200 Glycine max HOM05D000570 ORTHO05D001174 5.2e-09 65.1 112 42.9
Thhalv10020162m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 6.7e-09 64.7 117 41.9
ATR0693G317 Amborella trichopoda HOM05D000570 ORTHO05D002740 1.2e-08 63.9 128 32.8
CARHR044040 Cardamine hirsuta HOM05D000570 ORTHO05D001174 2.0e-08 63.2 119 38.7
Hund23438 Selenicereus undatus HOM05D000570 ORTHO05D001174 3.3e-08 62.4 34 70.6
Cfa000167 Carpinus fangiana HOM05D000570 ORTHO05D001174 5.7e-08 61.6 80 47.5
HPP92_012346 Vanilla planifolia HOM05D000570 ORTHO05D002740 7.5e-08 61.2 118 39.0
SEGI_17819 Sequoiadendron giganteum HOM05D000570 ORTHO05D001174 1.3e-07 60.5 130 36.9
Hund05695 Selenicereus undatus HOM05D000570 ORTHO05D001174 1.7e-07 60.1 136 33.1
RcHm_v2.0_Chr2g0148621 Rosa chinensis HOM05D000570 ORTHO05D001174 2.2e-07 59.7 113 36.3
Carub.0001s4301 Capsella rubella HOM05D000570 ORTHO05D001174 2.8e-07 59.3 139 36.0
CDE07G0083 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.8e-07 58.5 97 39.2
Eucgr.D01360 Eucalyptus grandis HOM05D000570 ORTHO05D001174 6.3e-07 58.2 77 46.8
DCAR_002200 Daucus carota HOM05D000570 ORTHO05D001174 1.1e-06 57.4 103 40.8
AL1G62430 Arabidopsis lyrata HOM05D000570 ORTHO05D001174 1.4e-06 57.0 89 42.7
AL7G31560 Arabidopsis lyrata HOM05D000570 ORTHO05D001174 1.8e-06 56.6 106 40.6
BcaC05g29092 Brassica carinata HOM05D000570 ORTHO05D001174 1.8e-06 56.6 125 41.6
C05p53010 Brassica napus HOM05D000570 ORTHO05D001174 1.8e-06 56.6 125 41.6
BolC5t33981H Brassica oleracea HOM05D000570 ORTHO05D001174 1.8e-06 56.6 125 41.6
arahy.Tifrunner.gnm1.ann1.195J1V Arachis hypogaea HOM05D000570 ORTHO05D001174 2.4e-06 56.2 112 41.1
Carub.0003s1405 Capsella rubella HOM05D000570 ORTHO05D001174 2.4e-06 56.2 90 41.1
Manes.17G027800 Manihot esculenta HOM05D000570 ORTHO05D001174 2.4e-06 56.2 28 82.1
Rhsim06G0149400 Rhododendron simsii HOM05D000570 ORTHO05D002740 2.4e-06 56.2 131 38.2
AUR62021905 Chenopodium quinoa HOM05D000570 ORTHO05D001174 3.1e-06 55.8 137 32.1
MELO3C021727.2 Cucumis melo HOM05D000570 ORTHO05D001174 3.1e-06 55.8 112 34.8
CsaV3_3G031130 Cucumis sativus L. HOM05D000570 ORTHO05D001174 5.3e-06 55.1 126 34.9
Rhsim08G0251800 Rhododendron simsii HOM05D000570 ORTHO05D001174 5.3e-06 55.1 95 41.1
AT1G53730 Arabidopsis thaliana HOM05D000570 ORTHO05D001174 7.0e-06 54.7 114 37.7
FvH4_6g36180 Fragaria vesca HOM05D000570 ORTHO05D001174 7.0e-06 54.7 116 34.5
FAN02G2943 Fragaria x ananassa HOM05D000570 ORTHO05D001174 7.0e-06 54.7 116 34.5
Manes.11G011300 Manihot esculenta HOM05D000570 ORTHO05D001174 7.0e-06 54.7 42 57.1
HPP92_010491 Vanilla planifolia HOM05D000570 ORTHO05D001174 7.0e-06 54.7 83 39.8
arahy.Tifrunner.gnm1.ann1.W4Y87I Arachis hypogaea HOM05D000570 ORTHO05D001174 9.1e-06 54.3 112 40.2
ECA232G1572 Erigeron canadensis HOM05D000570 ORTHO05D001174 9.1e-06 54.3 137 35.8
FAN09G4028 Fragaria x ananassa HOM05D000570 ORTHO05D001174 9.1e-06 54.3 116 34.5
FAN14G1844 Fragaria x ananassa HOM05D000570 ORTHO05D001174 9.1e-06 54.3 116 34.5
Gohir.D05G116500 Gossypium hirsutum HOM05D000570 ORTHO05D001174 9.1e-06 54.3 110 40.9
Gorai.009G120500 Gossypium raimondii HOM05D000570 ORTHO05D001174 9.1e-06 54.3 110 40.9
Os07g0618400 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 9.1e-06 54.3 39 59.0


User provided reference genes

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