Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.3e-212 741.5 393 100.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.9e-156 553.9 446 68.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.9e-151 539.7 406 73.4
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.3e-151 537.7 410 72.2
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.5e-148 530.0 405 74.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.2e-146 521.9 413 69.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 5.4e-146 521.5 425 66.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 7.1e-146 521.2 424 70.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-142 509.2 413 69.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.1e-141 505.8 424 66.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 4.0e-141 505.4 458 64.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-140 503.4 438 62.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.4e-140 502.3 439 68.1
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 5.8e-140 501.5 418 68.7
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-138 496.1 439 63.1
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.0e-136 490.7 421 67.9
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.9e-136 488.8 452 61.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.1e-135 487.3 434 63.6
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.5e-135 486.1 447 63.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.6e-134 482.3 450 60.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.1e-133 480.7 425 63.1
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.9e-133 478.0 441 63.0
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.0e-132 476.5 448 63.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.6e-132 476.1 417 66.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.7e-131 473.4 438 63.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.2e-131 473.0 394 68.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 3.8e-131 472.2 446 61.9
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.6e-129 466.8 441 61.2
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 6.0e-129 464.9 443 60.9
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.0e-128 464.2 497 56.1
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.9e-128 462.2 446 60.8
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-127 460.3 420 63.8
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 7.4e-127 458.0 456 58.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 1.3e-126 457.2 437 61.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 2.8e-126 456.1 427 61.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 6.2e-126 454.9 489 56.6
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 6.2e-126 454.9 441 63.0
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-125 454.1 443 58.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.4e-125 453.0 423 61.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.4e-125 453.0 430 60.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.0e-125 452.2 435 62.1
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 9.0e-125 451.1 465 59.8
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-124 449.5 433 61.4
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.4e-124 449.1 435 58.6
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 3.4e-124 449.1 474 58.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 4.5e-124 448.7 421 64.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.5e-124 448.7 433 61.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.6e-124 448.0 361 69.5
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 7.6e-124 448.0 445 59.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 3.2e-122 442.6 449 59.2
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.6e-121 440.3 394 62.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 7.9e-121 438.0 477 57.0
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.0e-120 436.0 478 56.3
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.1e-120 435.3 477 55.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.5e-119 433.7 478 56.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.5e-119 433.0 431 59.9
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.8e-118 429.5 440 58.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.8e-118 428.7 477 54.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 8.2e-118 427.9 509 51.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.1e-117 427.6 458 55.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-117 427.2 435 57.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.8e-117 426.8 434 58.1
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.4e-117 426.4 484 54.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 4.1e-117 425.6 444 56.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 9.0e-117 424.5 394 63.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.4e-116 422.5 478 55.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.5e-116 422.2 511 51.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-114 417.2 400 64.2
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.4e-114 417.2 431 58.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 4.2e-114 415.6 428 57.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 5.5e-114 415.2 503 52.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.1e-113 413.3 427 60.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.1e-113 413.3 456 53.5
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.1e-113 411.8 455 53.6
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.3e-112 410.6 488 53.1
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.5e-111 407.1 422 59.5
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.5e-111 406.4 433 58.0
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.3e-111 405.6 421 58.2
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-110 404.1 422 59.5
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.8e-110 402.9 416 57.7
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 6.3e-110 401.7 419 56.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 6.3e-110 401.7 436 56.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.4e-109 399.8 423 56.3
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.5e-108 397.1 422 56.4
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.5e-108 397.1 406 58.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.5e-108 395.6 419 55.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.2e-106 389.4 464 52.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.6e-105 385.6 431 56.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.5e-103 380.6 422 55.9
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.3e-103 379.4 409 56.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 4.4e-103 379.0 463 52.9
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.4e-101 373.2 488 50.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 5.3e-101 372.1 438 53.9
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.6e-100 369.8 428 54.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 4.5e-100 369.0 451 52.3
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 3.8e-99 365.9 447 51.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 5.0e-99 365.5 422 53.6
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.2e-98 362.8 422 53.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 4.2e-98 362.5 487 48.5
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.4e-96 357.5 461 50.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.0e-96 356.3 390 56.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 8.8e-96 354.8 506 48.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.8e-94 349.0 418 52.4
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.8e-94 349.0 401 53.6
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.9e-91 339.7 427 49.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.2e-87 327.8 492 46.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.0e-87 327.0 385 53.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 3.3e-87 326.2 372 54.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.2e-84 317.8 196 81.6
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.0e-80 302.8 426 48.1
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 6.3e-78 295.4 420 46.7
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 8.3e-78 295.0 439 44.9
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.1e-77 293.1 171 86.0
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.9e-75 286.6 484 44.2
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 5.0e-75 285.8 498 41.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.5e-74 281.6 191 75.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.1e-73 280.4 353 50.7
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 9.8e-71 271.6 463 43.6
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.3e-70 271.2 300 56.0
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.4e-69 266.9 312 53.2
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.6e-65 253.1 292 54.8
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.8e-64 250.8 336 51.5
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.5e-58 231.1 505 37.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.4e-55 219.9 128 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.7e-52 210.3 362 39.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 7.5e-47 192.2 171 62.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 7.6e-39 165.6 406 35.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.3e-38 164.9 361 37.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.1e-36 157.5 156 52.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 5.6e-34 149.4 157 51.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.1e-33 147.5 293 39.6
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.3e-29 132.1 97 70.1
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.9e-27 126.7 147 43.5
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.4e-24 118.2 169 49.7
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.9e-22 110.5 65 84.6
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 3.0e-19 100.5 363 29.5
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 3.0e-19 100.5 363 29.5
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 3.0e-19 100.5 97 57.7
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.4e-18 95.9 116 51.7
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-16 91.7 128 46.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 6.9e-16 89.4 112 48.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.2e-14 84.3 49 79.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.1e-13 79.3 76 57.9
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.1e-10 72.0 233 31.3
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 4.3e-10 70.1 151 35.8
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 1.0e-06 58.9 40 77.5


User provided reference genes

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