Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.0e-167 590.9 326 100.0
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.2e-122 443.7 330 72.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 6.1e-119 431.4 268 83.2
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.7e-116 423.3 312 76.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.1e-115 418.7 329 66.6
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.3e-113 413.7 313 72.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 9.5e-112 407.5 342 65.8
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.1e-111 406.4 325 71.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.1e-111 406.4 325 71.7
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.7e-111 405.2 323 70.6
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.3e-110 402.9 316 69.3
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 4.0e-110 402.1 319 71.5
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 6.8e-110 401.4 312 70.2
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 6.8e-110 401.4 321 69.5
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 8.9e-110 401.0 325 69.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 8.9e-110 401.0 326 66.0
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 4.4e-109 398.7 318 67.3
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.4e-108 394.8 291 73.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.1e-107 394.0 287 70.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.8e-107 393.3 324 64.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 3.2e-107 392.5 332 68.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 9.2e-107 391.0 331 68.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.2e-106 390.6 324 64.2
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.5e-106 389.0 344 67.2
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 6.0e-106 388.3 289 73.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.3e-105 386.3 327 66.1
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 3.0e-105 386.0 282 73.8
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 3.0e-105 386.0 294 67.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.9e-105 385.6 311 64.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.6e-105 384.8 312 67.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.5e-104 382.9 287 74.6
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.3e-104 382.5 302 66.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 3.3e-104 382.5 295 69.8
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.3e-104 382.5 317 70.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.3e-104 382.1 306 66.0
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 3.6e-103 379.0 340 65.9
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.6e-103 379.0 372 61.3
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 8.0e-103 377.9 289 71.3
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.4e-102 377.1 304 70.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.4e-102 377.1 305 68.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.3e-102 376.3 309 68.3
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 3.1e-102 375.9 312 65.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 6.8e-102 374.8 300 69.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.6e-101 372.9 327 63.3
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.6e-101 372.9 320 66.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 3.4e-101 372.5 326 66.3
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 5.8e-101 371.7 319 68.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 7.5e-101 371.3 296 67.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.4e-99 367.1 297 70.7
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 7.0e-99 364.8 266 77.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 9.2e-99 364.4 321 61.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.7e-98 362.8 333 66.7
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.7e-98 362.8 273 70.3
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 7.8e-98 361.3 273 75.5
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.7e-97 360.1 258 72.1
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.7e-97 360.1 322 62.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 8.6e-97 357.8 328 64.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.3e-96 355.9 294 63.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.1e-95 353.2 317 63.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.4e-94 350.5 319 62.7
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.1e-94 349.4 256 68.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 5.2e-94 348.6 245 71.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.0e-93 346.7 319 63.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 5.8e-93 345.1 253 68.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 2.2e-92 343.2 297 67.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.9e-92 342.8 223 75.3
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.9e-91 340.1 222 75.7
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.4e-91 339.7 306 68.0
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.4e-91 338.6 346 61.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.1e-90 336.7 321 60.4
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 7.8e-90 334.7 336 62.5
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.3e-89 334.0 324 57.1
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 8.6e-89 331.3 316 65.8
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.1e-88 330.9 218 75.2
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.5e-88 329.7 316 65.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.3e-88 329.3 300 64.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 5.6e-88 328.6 302 63.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.3e-88 328.2 324 56.2
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 3.6e-87 325.9 310 57.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.1e-86 324.3 310 62.6
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.4e-86 323.9 346 60.1
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.8e-86 323.6 337 58.8
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.4e-86 323.2 299 58.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.4e-86 323.2 258 69.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.1e-86 322.8 275 61.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.0e-86 322.4 309 61.2
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.0e-86 322.4 316 63.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.0e-86 322.4 237 67.1
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 2.0e-85 320.1 314 64.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 3.4e-85 319.3 314 64.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 4.4e-85 318.9 314 64.3
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.4e-85 318.9 310 58.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.7e-84 317.0 244 67.2
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.9e-84 316.2 332 61.1
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.9e-84 316.2 332 61.1
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.3e-81 307.4 254 67.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 3.9e-81 305.8 329 61.1
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.9e-81 305.8 291 60.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.5e-80 303.1 308 59.1
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.5e-80 303.1 308 59.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.2e-79 300.8 308 58.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.6e-79 299.3 227 67.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 6.2e-79 298.5 304 59.2
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 2.6e-77 293.1 332 58.4
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 4.4e-77 292.4 327 52.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.2e-76 290.0 316 59.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.6e-72 275.4 233 58.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-69 266.9 306 59.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 9.9e-69 264.6 182 69.2
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.9e-67 260.4 295 53.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.1e-66 256.9 285 50.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.1e-62 243.0 291 50.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.8e-60 236.1 143 82.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.7e-58 229.9 319 44.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.7e-55 219.5 217 50.2
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.1e-54 218.0 369 47.2
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 4.2e-51 206.1 265 48.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.2e-47 191.8 117 77.8
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.1e-46 191.4 177 58.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.9e-44 183.3 135 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.1e-40 171.4 257 42.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.2e-36 157.1 95 76.8
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.2e-36 157.1 97 75.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.5e-35 153.7 177 42.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.6e-34 149.8 218 39.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-26 124.0 226 31.0
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.3e-24 116.7 70 78.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.2e-23 114.0 196 34.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.4e-22 111.3 168 50.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.3e-20 104.8 177 39.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 6.7e-17 92.4 120 44.2
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.0e-16 90.9 69 71.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.5e-12 75.5 236 26.7
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 9.4e-11 72.0 197 27.4
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 4.7e-10 69.7 199 27.6
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-08 64.7 62 56.5
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 3.1e-06 57.0 98 25.5
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 7.0e-06 55.8 227 23.3


User provided reference genes

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