Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047242 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.2e-54 215.3 102 100.0
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 8.2e-54 213.4 102 99.0
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.1e-53 211.5 102 98.0
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.1e-53 211.5 102 98.0
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 8.8e-48 193.4 102 90.2
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.3e-46 189.5 102 91.2
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 2.8e-46 188.3 102 88.2
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 3.7e-46 188.0 102 87.3
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 6.3e-46 187.2 102 87.3
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 6.3e-46 187.2 102 87.3
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 1.1e-45 186.4 102 88.2
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.2e-44 183.0 102 87.3
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.2e-44 183.0 102 85.3
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 1.6e-44 182.6 102 85.3
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.6e-44 182.6 102 84.3
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 3.5e-44 181.4 102 86.3
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 3.5e-44 181.4 102 84.3
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.9e-44 180.6 102 84.3
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 5.9e-44 180.6 102 86.3
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 7.7e-44 180.3 102 84.3
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.3e-43 179.5 102 84.3
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 3.8e-43 177.9 102 81.4
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 1.5e-42 176.0 101 82.2
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.9e-42 175.6 102 82.4
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.9e-42 175.6 101 84.2
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 3.2e-42 174.9 102 83.3
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 4.2e-42 174.5 102 80.4
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 5.5e-42 174.1 102 80.4
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 5.5e-42 174.1 102 79.4
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 7.2e-42 173.7 102 81.4
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 1.6e-41 172.6 102 79.4
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 2.7e-41 171.8 102 80.4
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 3.6e-41 171.4 102 79.4
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 4.7e-41 171.0 102 82.4
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 8.0e-41 170.2 102 79.4
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 8.0e-41 170.2 102 79.4
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 1.4e-40 169.5 102 81.4
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.4e-40 169.5 102 77.5
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.8e-40 169.1 102 77.5
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 1.8e-40 169.1 102 78.4
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 1.8e-40 169.1 102 78.4
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 4.0e-40 167.9 102 77.5
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 5.2e-40 167.5 101 79.2
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 6.7e-40 167.2 102 77.5
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 8.8e-40 166.8 102 78.4
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 8.8e-40 166.8 102 76.5
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 8.8e-40 166.8 102 80.4
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 8.8e-40 166.8 101 79.2
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 1.2e-39 166.4 101 78.2
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 1.5e-39 166.0 102 77.5
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 1.5e-39 166.0 102 76.5
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.0e-39 165.6 88 88.6
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 80.4
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.0e-39 165.6 102 76.5
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 2.6e-39 165.2 102 77.5
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 2.6e-39 165.2 101 78.2
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.3e-39 164.9 102 78.4
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 3.3e-39 164.9 102 78.4
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 3.3e-39 164.9 102 75.5
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 3.3e-39 164.9 102 74.5
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 4.4e-39 164.5 102 76.5
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 4.4e-39 164.5 102 75.5
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 5.7e-39 164.1 102 76.5
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 5.7e-39 164.1 102 81.4
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 7.5e-39 163.7 102 76.5
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 9.7e-39 163.3 102 79.4
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 1.3e-38 162.9 102 79.4
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.7e-38 162.5 102 75.5
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.2e-38 162.2 102 76.5
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.2e-38 162.2 102 75.5
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 2.8e-38 161.8 102 77.5
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 2.8e-38 161.8 102 74.5
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 4.8e-38 161.0 102 75.5
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 4.8e-38 161.0 101 76.2
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 8.2e-38 160.2 102 72.5
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.1e-37 159.8 102 73.5
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.1e-37 159.8 102 76.5
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 1.4e-37 159.5 102 75.5
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.4e-37 158.7 100 80.0
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 5.3e-37 157.5 102 75.5
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 7.0e-37 157.1 102 74.5
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 1.2e-36 156.4 102 71.6
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.2e-36 156.4 102 72.5
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 1.6e-36 156.0 102 75.5
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.6e-36 156.0 102 72.5
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 2.0e-36 155.6 102 71.6
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 2.0e-36 155.6 102 71.6
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.0e-36 155.6 102 71.6
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 3.5e-36 154.8 102 70.6
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 3.5e-36 154.8 102 72.5
Nn2g15719 Nelumbo nucifera HOM05D003463 ORTHO05D004206 3.5e-36 154.8 94 80.9
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 5.9e-36 154.1 102 68.6
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 5.9e-36 154.1 102 68.6
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 1.0e-35 153.3 102 71.6
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 1.0e-35 153.3 102 68.6
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.7e-35 152.5 102 67.6
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.7e-35 152.5 102 67.6
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.7e-35 152.5 102 70.6
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 2.2e-35 152.1 102 66.7
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 2.2e-35 152.1 102 67.6
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 2.2e-35 152.1 102 67.6
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 2.2e-35 152.1 102 68.6
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 2.9e-35 151.8 102 67.6
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 3.8e-35 151.4 102 70.6
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 5.0e-35 151.0 102 70.6
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 6.5e-35 150.6 102 66.7
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 6.5e-35 150.6 102 66.7
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 6.5e-35 150.6 102 66.7
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 6.5e-35 150.6 102 66.7
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 6.5e-35 150.6 102 69.6
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 8.5e-35 150.2 102 69.6
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.1e-34 149.8 102 69.6
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 2.5e-34 148.7 102 65.7
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 2.5e-34 148.7 102 65.7
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 3.2e-34 148.3 102 68.6
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 5.5e-34 147.5 102 64.7
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 5.5e-34 147.5 102 64.7
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 7.2e-34 147.1 102 67.6
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.6e-33 146.0 102 67.6
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.7e-30 136.0 101 68.3
Nn5g27117 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.7e-30 136.0 103 71.8
Nn5g27119 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.7e-30 136.0 103 71.8
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 1.7e-30 136.0 101 61.4
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 3.7e-30 134.8 102 60.8
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 4.2e-26 121.3 95 63.2
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 9.5e-26 120.2 73 78.1
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 1.3e-22 109.8 102 52.9
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 2.2e-22 109.0 102 58.8
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 7.0e-13 77.4 102 43.1
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 2.0e-12 75.9 102 42.2
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 2.0e-12 75.9 102 42.2
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 2.7e-12 75.5 102 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 3.3e-10 68.6 102 37.3
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 6.8e-08 60.8 104 37.5


User provided reference genes

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