Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047238 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 1.7e-140 502.7 259 100.0
CSS0020333 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 7.3e-83 311.2 277 60.6
CSS0032511 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 2.4e-57 226.5 287 50.2
CSS0008729 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 1.3e-47 194.1 219 55.3
Rhsim01G0060700 Rhododendron simsii HOM05D014769 ORTHO05D015780 2.2e-34 150.2 316 38.0
Rhsim01G0025100 Rhododendron simsii HOM05D014769 ORTHO05D015780 7.0e-33 145.2 295 38.3
CSS0032929 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 1.4e-28 131.0 296 33.1
CSS0026192 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 1.2e-24 117.9 296 31.8
CSS0028281 Camellia sinensis var. sinensis HOM05D014769 ORTHO05D015780 2.1e-21 107.1 212 36.3
Rhsim01G0024700 Rhododendron simsii HOM05D010307 ORTHO05D000038 5.2e-20 102.4 113 48.7
CSS0015776 Camellia sinensis var. sinensis HOM05D010307 ORTHO05D015780 1.2e-19 101.3 207 35.7
Actinidia20934 Actinidia chinensis HOM05D014769 ORTHO05D015780 4.8e-18 95.9 251 33.9
vmacro17512 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 4.1e-09 66.2 64 50.0
ClCG08G005710 Citrullus lanatus HOM05D000082 ORTHO05D000038 9.2e-09 65.1 62 45.2
MBI18_g32094_MAGBIO Magnolia biondii HOM05D025173 ORTHO05D000038 9.2e-09 65.1 60 48.3
CsaV3_6G034420 Cucumis sativus L. HOM05D000082 ORTHO05D000038 1.2e-08 64.7 75 40.0
MELO3C010617.2 Cucumis melo HOM05D000082 ORTHO05D000038 2.7e-08 63.5 52 46.2
CSS0044666 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 3.5e-08 63.2 64 42.2
COL.COLO4_34614 Corchorus olitorius HOM05D000082 ORTHO05D014197 3.5e-08 63.2 59 54.2
Aqoxy6G00829 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 4.5e-08 62.8 75 36.0
Cfa000686 Carpinus fangiana HOM05D000082 ORTHO05D000038 4.5e-08 62.8 96 36.5
MBI18_g40969_MAGBIO Magnolia biondii HOM05D025173 ORTHO05D000038 5.9e-08 62.4 60 46.7
Cfa002019 Carpinus fangiana HOM05D002312 ORTHO05D000038 7.8e-08 62.0 63 42.9
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 1.0e-07 61.6 61 41.0
Thecc.03G082200 Theobroma cacao HOM05D000082 ORTHO05D000038 1.3e-07 61.2 66 45.5
TWI32G0104 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 1.3e-07 61.2 61 45.9
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.7e-07 60.8 63 41.3
AUR62024637 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.3e-07 60.5 97 33.0
Lj1g0026265 Lotus japonicus HOM05D000082 ORTHO05D000038 2.3e-07 60.5 71 45.1
Nn4g24591 Nelumbo nucifera HOM05D000082 ORTHO05D000038 2.3e-07 60.5 63 44.4
Rhsim01G0199700 Rhododendron simsii HOM05D000082 ORTHO05D026280 2.3e-07 60.5 70 42.9
Aqoxy3G03570 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 2.9e-07 60.1 74 40.5
EL10Ac6g14959 Beta vulgaris HOM05D000082 ORTHO05D000038 2.9e-07 60.1 62 50.0
CsaV3_2G036020 Cucumis sativus L. HOM05D000082 ORTHO05D014613 2.9e-07 60.1 67 41.8
Duzib205G0981 Durio zibethinus HOM05D000082 ORTHO05D000038 2.9e-07 60.1 93 37.6
Sed0002646 Sechium edule HOM05D000082 ORTHO05D000038 2.9e-07 60.1 107 32.7
COL.COLO4_31877 Corchorus olitorius HOM05D000082 ORTHO05D000038 3.9e-07 59.7 42 57.1
Rhsim01G0199800 Rhododendron simsii HOM05D000082 ORTHO05D026280 3.9e-07 59.7 55 49.1
CsaV3_2G011420 Cucumis sativus L. HOM05D000082 ORTHO05D000038 6.6e-07 58.9 63 46.0
Prupe.1G495200 Prunus persica HOM05D000082 ORTHO05D000038 8.6e-07 58.5 43 46.5
Aqoxy4G02838 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 1.1e-06 58.2 74 36.5
EL10Ac9g21360 Beta vulgaris HOM05D000082 ORTHO05D000038 1.1e-06 58.2 82 43.9
EL10Ac9g21361 Beta vulgaris HOM05D000082 ORTHO05D000038 1.1e-06 58.2 82 43.9
EL10Ac9g21366 Beta vulgaris HOM05D000082 ORTHO05D000038 1.1e-06 58.2 82 43.9
Cfa014419 Carpinus fangiana HOM05D000082 ORTHO05D028617 1.1e-06 58.2 49 49.0
Duzib084G1253 Durio zibethinus HOM05D000082 ORTHO05D000038 1.5e-06 57.8 64 42.2
MD08G1162100 Malus domestica HOM05D000082 ORTHO05D000038 1.5e-06 57.8 43 44.2
Rhsim08G0158100 Rhododendron simsii HOM05D000082 ORTHO05D000001 1.5e-06 57.8 98 34.7
EL10Ac9g21363 Beta vulgaris HOM05D000082 ORTHO05D000038 1.9e-06 57.4 89 40.4
EL10Ac9g21364 Beta vulgaris HOM05D000082 ORTHO05D000038 1.9e-06 57.4 89 40.4
Dinv09567 Davidia involucrata HOM05D011289 ORTHO05D013541 1.9e-06 57.4 65 44.6
Gohir.D05G009150 Gossypium hirsutum HOM05D013045 ORTHO05D011325 1.9e-06 57.4 217 29.0
Atru.chr3.1363 Acer truncatum HOM05D000082 ORTHO05D000038 2.5e-06 57.0 76 39.5
Aqoxy3G02526 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 2.5e-06 57.0 60 41.7
Ciclev10022101m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.5e-06 57.0 43 53.5
COL.COLO4_29359 Corchorus olitorius HOM05D000082 ORTHO05D000038 2.5e-06 57.0 43 44.2
Duzib068G0407 Durio zibethinus HOM05D000082 ORTHO05D000038 2.5e-06 57.0 63 44.4
QL10p015716 Quercus lobata HOM05D000082 ORTHO05D000038 2.5e-06 57.0 61 41.0
RcHm_v2.0_Chr6g0295911 Rosa chinensis HOM05D000082 ORTHO05D000038 2.5e-06 57.0 45 48.9
Sc02g0006210 Simmondsia chinensis HOM05D010307 ORTHO05D037605 2.5e-06 57.0 296 21.6
Cpa.g.sc26.126 Carica papaya HOM05D000082 ORTHO05D000038 3.3e-06 56.6 57 40.4
CDE11G1015 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 3.3e-06 56.6 49 44.9
AUR62034192 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041137 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041138 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041139 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041141 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041142 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041143 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
AUR62041144 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.3e-06 56.6 52 42.3
Haze_00433 Corylus avellana HOM05D000082 ORTHO05D000038 3.3e-06 56.6 93 36.6
Duzib151G0675 Durio zibethinus HOM05D014838 ORTHO05D014197 3.3e-06 56.6 62 46.8
Duzib151G0810 Durio zibethinus HOM05D014838 ORTHO05D014197 3.3e-06 56.6 62 46.8
Lalb_Chr19g0134131 Lupinus albus HOM05D000082 ORTHO05D000038 3.3e-06 56.6 66 36.4
Nn4g24590 Nelumbo nucifera HOM05D000082 ORTHO05D000038 3.3e-06 56.6 63 42.9
Sed0022808 Sechium edule HOM05D000082 ORTHO05D000038 3.3e-06 56.6 48 47.9
AT5G54990 Arabidopsis thaliana HOM05D010088 ORTHO05D014332 4.3e-06 56.2 44 52.3
COL.COLO4_11210 Corchorus olitorius HOM05D000082 ORTHO05D000038 4.3e-06 56.2 63 42.9
Prupe.8G211400 Prunus persica HOM05D000082 ORTHO05D000038 4.3e-06 56.2 44 54.5
Rhsim08G0159200 Rhododendron simsii HOM05D000082 ORTHO05D000038 4.3e-06 56.2 53 43.4
Sabra07G0087500 Salix brachista HOM05D000082 ORTHO05D000038 4.3e-06 56.2 46 45.7
THA.LOC104816301 Tarenaya hassleriana HOM05D000082 ORTHO05D009107 4.3e-06 56.2 63 46.0
EL10Ac5g11154 Beta vulgaris HOM05D000082 ORTHO05D000038 5.6e-06 55.8 52 51.9
CANSAT21G1173 Cannabis sativa HOM05D000082 ORTHO05D000038 5.6e-06 55.8 96 31.2
Cfa027086 Carpinus fangiana HOM05D000082 ORTHO05D000038 5.6e-06 55.8 50 42.0
AUR62041140 Chenopodium quinoa HOM05D010307 ORTHO05D016220 5.6e-06 55.8 52 42.3
FAN24G0679 Fragaria x ananassa HOM05D029497 ORTHO05D000038 5.6e-06 55.8 47 44.7
EL10Ac7g17595 Beta vulgaris HOM05D016861 ORTHO05D018265 7.3e-06 55.5 43 58.1
COL.COLO4_33147 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.3e-06 55.5 63 42.9
FvH4_2g27040 Fragaria vesca HOM05D000082 ORTHO05D000038 7.3e-06 55.5 45 46.7
Gohir.A08G037000 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.3e-06 55.5 95 35.8
Gohir.D13G092500 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.3e-06 55.5 68 44.1
Lj7C305T23 Lonicera japonica HOM05D000082 ORTHO05D000038 7.3e-06 55.5 59 42.4
Psat5g087240 Pisum sativum HOM05D000082 ORTHO05D000038 7.3e-06 55.5 63 38.1
Dinv40416 Davidia involucrata HOM05D000082 ORTHO05D000038 9.5e-06 55.1 63 34.9
Gohir.D05G366033 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-06 55.1 57 47.4
Gorai.009G425900 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.5e-06 55.1 57 47.4
Sabra07G0089700 Salix brachista HOM05D000082 ORTHO05D000038 9.5e-06 55.1 43 46.5


User provided reference genes

Program Settings