Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047142 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 2.2e-38 161.8 80 100.0
Actinidia04865 Actinidia chinensis HOM05D000041 ORTHO05D006140 4.6e-28 127.5 67 92.5
vmacro17573 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 2.0e-26 122.1 70 82.9
CSS0043787 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 3.1e-24 114.8 70 81.4
Actinidia19018 Actinidia chinensis HOM05D000041 ORTHO05D006140 5.9e-23 110.5 70 78.6
Oeu052459.1 Olea europaea HOM05D000041 ORTHO05D006140 2.2e-22 108.6 70 75.7
Dinv38747 Davidia involucrata HOM05D000041 ORTHO05D006140 5.0e-22 107.5 70 77.1
MSTRG.23000 Avicennia marina HOM05D000041 ORTHO05D006140 5.5e-21 104.0 70 74.3
Migut.I00214 Erythranthe guttata HOM05D000041 ORTHO05D006140 1.6e-20 102.4 71 73.2
Cc04_g14400 Coffea canephora HOM05D000041 ORTHO05D006140 4.7e-20 100.9 70 70.0
DCAR_026036 Daucus carota HOM05D000041 ORTHO05D006140 6.1e-20 100.5 70 67.1
Lj5A107T101 Lonicera japonica HOM05D000041 ORTHO05D006140 6.1e-20 100.5 73 69.9
AUR62008466 Chenopodium quinoa HOM05D000041 ORTHO05D006140 5.1e-19 97.4 70 67.1
DCAR_016582 Daucus carota HOM05D000041 ORTHO05D006140 5.1e-19 97.4 64 70.3
Duzib205G1692 Durio zibethinus HOM05D000041 ORTHO05D006140 1.1e-18 96.3 70 68.6
Lalb_Chr11g0071711 Lupinus albus HOM05D000041 ORTHO05D006140 1.1e-18 96.3 70 67.1
arahy.Tifrunner.gnm1.ann1.JQ6XER Arachis hypogaea HOM05D000041 ORTHO05D006140 2.6e-18 95.1 70 65.7
PGR083G0939 Punica granatum HOM05D000041 ORTHO05D006140 2.6e-18 95.1 70 64.3
Cpa.g.sc13.299 Carica papaya HOM05D000041 ORTHO05D006140 4.4e-18 94.4 70 68.6
Gohir.A07G070500 Gossypium hirsutum HOM05D000041 ORTHO05D006140 4.4e-18 94.4 70 65.7
Gohir.D07G075000 Gossypium hirsutum HOM05D000041 ORTHO05D006140 4.4e-18 94.4 70 65.7
Gorai.001G079100 Gossypium raimondii HOM05D000041 ORTHO05D006140 4.4e-18 94.4 70 65.7
FvH4_5g14510 Fragaria vesca HOM05D000041 ORTHO05D006140 5.7e-18 94.0 70 65.7
Dinv10659 Davidia involucrata HOM05D000041 ORTHO05D006140 7.4e-18 93.6 65 70.8
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 7.4e-18 93.6 70 64.3
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 9.7e-18 93.2 66 66.7
CsaV3_1G002560 Cucumis sativus L. HOM05D000041 ORTHO05D006140 1.3e-17 92.8 70 65.7
Aa31LG7G3420 Aethionema arabicum HOM05D000041 ORTHO05D006140 2.2e-17 92.0 70 65.7
EL10Ac5g11065 Beta vulgaris HOM05D000041 ORTHO05D006140 2.2e-17 92.0 70 64.3
CARHR019290 Cardamine hirsuta HOM05D000041 ORTHO05D006140 2.2e-17 92.0 70 64.3
RcHm_v2.0_Chr7g0182141 Rosa chinensis HOM05D000041 ORTHO05D006140 2.2e-17 92.0 70 65.7
Lj1g0011184 Lotus japonicus HOM05D000041 ORTHO05D006140 2.8e-17 91.7 70 64.3
THA.LOC104813886 Tarenaya hassleriana HOM05D000041 ORTHO05D006140 2.8e-17 91.7 70 64.3
Ciclev10020015m.g Citrus clementina HOM05D000041 ORTHO05D006140 3.7e-17 91.3 70 64.3
COL.COLO4_36953 Corchorus olitorius HOM05D000041 ORTHO05D006140 3.7e-17 91.3 70 65.7
Lalb_Chr08g0235431 Lupinus albus HOM05D000041 ORTHO05D006140 3.7e-17 91.3 70 64.3
BcaB03g14492 Brassica carinata HOM05D000041 ORTHO05D006140 4.8e-17 90.9 70 64.3
AL1G31110 Arabidopsis lyrata HOM05D000041 ORTHO05D006140 6.3e-17 90.5 70 64.3
BcaC07g41312 Brassica carinata HOM05D000041 ORTHO05D006140 6.3e-17 90.5 70 64.3
Carub.0001s1829 Capsella rubella HOM05D000041 ORTHO05D006140 6.3e-17 90.5 70 64.3
Phvul.009G185000 Phaseolus vulgaris HOM05D000041 ORTHO05D006140 6.3e-17 90.5 70 61.4
Sp1g16630 Schrenkiella parvula HOM05D000041 ORTHO05D006140 6.3e-17 90.5 70 64.3
Eucgr.B00542 Eucalyptus grandis HOM05D000041 ORTHO05D006140 8.2e-17 90.1 70 61.4
BcaB07g31886 Brassica carinata HOM05D000041 ORTHO05D006140 1.1e-16 89.7 70 64.3
Prupe.5G198700 Prunus persica HOM05D000041 ORTHO05D006140 1.1e-16 89.7 70 64.3
Rhsim08G0152000 Rhododendron simsii HOM05D000041 ORTHO05D006140 1.1e-16 89.7 50 86.0
A06p14770 Brassica napus HOM05D000041 ORTHO05D006140 1.4e-16 89.4 70 64.3
BolC5t30395H Brassica oleracea HOM05D000041 ORTHO05D006140 1.4e-16 89.4 70 64.3
BraA06t24600Z Brassica rapa HOM05D000041 ORTHO05D006140 1.4e-16 89.4 70 64.3
Thhalv10007493m.g Eutrema salsugineum HOM05D000041 ORTHO05D006140 1.4e-16 89.4 70 62.9
Glyma.04G165900 Glycine max HOM05D000041 ORTHO05D006140 1.4e-16 89.4 70 61.4
BraA09t41355Z Brassica rapa HOM05D000041 ORTHO05D006140 1.8e-16 89.0 70 62.9
MELO3C017192.2 Cucumis melo HOM05D000041 ORTHO05D006140 1.8e-16 89.0 65 67.7
Peaxi162Scf00274g00349 Petunia axillaris HOM05D000041 ORTHO05D006140 1.8e-16 89.0 67 65.7
Thecc.03G094500 Theobroma cacao HOM05D000041 ORTHO05D006140 1.8e-16 89.0 67 68.7
Ah.02g113790 Amaranthus hybridus HOM05D000041 ORTHO05D006140 2.4e-16 88.6 70 62.9
A09p59780 Brassica napus HOM05D000041 ORTHO05D006140 2.4e-16 88.6 70 62.9
GSVIVG01007961001 Vitis vinifera HOM05D000041 ORTHO05D006140 2.4e-16 88.6 70 65.7
Glyma.06G196600 Glycine max HOM05D000041 ORTHO05D006140 3.1e-16 88.2 70 61.4
C08p43200 Brassica napus HOM05D000041 ORTHO05D006140 4.1e-16 87.8 70 62.9
BolC8t51874H Brassica oleracea HOM05D000041 ORTHO05D006140 4.1e-16 87.8 70 62.9
Ca_14694_v3 Cicer arietinum L. HOM05D000041 ORTHO05D006140 4.1e-16 87.8 70 60.0
vmacro16523 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 4.1e-16 87.8 70 61.4
ECA247G0382 Erigeron canadensis HOM05D000041 ORTHO05D006140 5.3e-16 87.4 64 64.1
CAN.G479.58 Capsicum annuum HOM05D000041 ORTHO05D006140 7.0e-16 87.0 73 61.6
Lsat_1_v5_gn_5_21580 Lactuca sativa HOM05D000041 ORTHO05D006140 7.0e-16 87.0 70 61.4
VMungo1309G2906 Vigna mungo HOM05D000041 ORTHO05D006140 7.0e-16 87.0 70 58.6
Duzib084G1175 Durio zibethinus HOM05D000041 ORTHO05D006140 9.1e-16 86.7 69 62.3
HanXRQChr04g0107201 Helianthus annuus HOM05D000041 ORTHO05D006140 9.1e-16 86.7 64 62.5
Potri.012G068100 Populus trichocarpa HOM05D000041 ORTHO05D006140 9.1e-16 86.7 70 62.9
Sed0001387 Sechium edule HOM05D000041 ORTHO05D006140 1.2e-15 86.3 70 61.4
BcaC05g25761 Brassica carinata HOM05D000041 ORTHO05D006140 2.0e-15 85.5 70 62.9
C05p16920 Brassica napus HOM05D000041 ORTHO05D006140 2.0e-15 85.5 70 62.9
Sc04g0002810 Simmondsia chinensis HOM05D000041 ORTHO05D006140 2.0e-15 85.5 70 60.0
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 2.6e-15 85.1 65 64.6
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 4.5e-15 84.3 67 62.7
Solyc03g115720.3 Solanum lycopersicum HOM05D000041 ORTHO05D006140 4.5e-15 84.3 67 64.2
Sopen03g034700 Solanum pennellii HOM05D000041 ORTHO05D006140 4.5e-15 84.3 67 64.2
Manes.14G081900 Manihot esculenta HOM05D000041 ORTHO05D006140 7.7e-15 83.6 70 61.4
unitig_0.g773 Utricularia gibba HOM05D000041 ORTHO05D006140 7.7e-15 83.6 62 66.1
SGA_v2.0_scaffold313G48328 Striga asiatica HOM05D000041 ORTHO05D006140 2.2e-14 82.0 50 78.0
MD06G1197800 Malus domestica HOM05D000041 ORTHO05D006140 2.9e-14 81.6 70 58.6
TWI81G0058 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 5.0e-14 80.9 70 60.0
HanXRQChr08g0236771 Helianthus annuus HOM05D000041 ORTHO05D006140 8.5e-14 80.1 63 61.9
Nn4g23280 Nelumbo nucifera HOM05D000041 ORTHO05D006140 8.5e-14 80.1 69 58.0
Lsat_1_v5_gn_1_14381 Lactuca sativa HOM05D000041 ORTHO05D006140 1.1e-13 79.7 58 63.8
ClCG06G016000 Citrullus lanatus HOM05D000041 ORTHO05D006140 2.5e-13 78.6 103 45.6
QL10p017885 Quercus lobata HOM05D000041 ORTHO05D006140 3.2e-13 78.2 61 62.3
ECA246G3346 Erigeron canadensis HOM05D000041 ORTHO05D006140 9.4e-13 76.6 59 62.7
MBI16_g06793_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D006140 9.4e-13 76.6 69 60.9
AUR62021627 Chenopodium quinoa HOM05D000041 ORTHO05D006140 1.2e-12 76.3 65 58.5
Lj9A467T86 Lonicera japonica HOM05D000041 ORTHO05D006140 1.2e-12 76.3 50 70.0
AT1G18660 Arabidopsis thaliana HOM05D000041 ORTHO05D006140 8.0e-12 73.6 62 59.7
TAR629G1015 Trochodendron aralioides HOM05D000041 ORTHO05D006140 1.0e-11 73.2 63 57.1
CANSAT80G0179 Cannabis sativa HOM05D000041 ORTHO05D006140 1.4e-11 72.8 78 51.3
Haze_07658 Corylus avellana HOM05D000041 ORTHO05D006140 4.0e-11 71.2 51 66.7
CDE04G1628 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 6.7e-11 70.5 71 50.7
PSO017G0721 Papaver somniferum HOM05D000041 ORTHO05D006140 8.8e-11 70.1 56 60.7
Psat5g199640 Pisum sativum HOM05D000041 ORTHO05D006140 2.0e-10 68.9 50 66.0
TWI60G1324 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 3.3e-10 68.2 51 66.7
HPP92_021256 Vanilla planifolia HOM05D000041 ORTHO05D006140 3.3e-10 68.2 69 58.0
MD14G1205300 Malus domestica HOM05D000041 ORTHO05D006140 5.7e-10 67.4 50 66.0
PSO478G5294 Papaver somniferum HOM05D000041 ORTHO05D000061 5.7e-10 67.4 51 60.8
SEGI_37634 Sequoiadendron giganteum HOM05D000041 ORTHO05D006140 5.7e-10 67.4 70 52.9
Zm00001eb020460 Zea mays HOM05D000041 ORTHO05D006140 1.3e-09 66.2 71 50.7
Nitab4.5_0001211g0200 Nicotiana tabacum HOM05D000041 ORTHO05D006140 2.8e-09 65.1 47 63.8
Nitab4.5_0002756g0120 Nicotiana tabacum HOM05D000041 ORTHO05D006140 1.1e-08 63.2 47 61.7
ATR0730G006 Amborella trichopoda HOM05D000041 ORTHO05D006140 3.1e-08 61.6 64 51.6
Rhsim12G0153700 Rhododendron simsii HOM05D000041 ORTHO05D006140 3.8e-06 54.7 68 45.6
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 6.5e-06 53.9 53 50.9


User provided reference genes

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