Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 6.3e-167 590.9 340 100.0
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 6.3e-167 590.9 340 100.0
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.1e-101 373.2 358 63.1
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 4.2e-78 295.8 360 54.4
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 1.5e-56 224.2 332 48.5
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 4.7e-53 212.6 360 46.1
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 3.2e-46 189.9 268 45.1
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 9.8e-43 178.3 349 39.8
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 3.7e-42 176.4 359 39.6
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 4.1e-41 172.9 360 38.1
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 9.1e-41 171.8 337 37.7
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 9.1e-41 171.8 374 39.6
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 8.8e-36 155.2 365 38.4
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.0e-31 141.7 346 36.4
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 1.9e-30 137.5 350 35.4
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 1.9e-30 137.5 365 35.1
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 1.9e-30 137.5 356 36.0
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 2.5e-30 137.1 358 34.6
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 7.2e-30 135.6 368 36.7
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 2.3e-28 130.6 349 35.0
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 3.0e-28 130.2 260 41.2
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 4.0e-28 129.8 349 35.2
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 5.2e-28 129.4 355 37.2
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 2.6e-27 127.1 260 40.4
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 3.7e-26 123.2 346 34.4
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 6.4e-26 122.5 362 34.8
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 2.4e-25 120.6 345 33.3
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 4.1e-25 119.8 364 33.2
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 6.6e-23 112.5 333 33.9
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.3e-22 110.2 356 30.9
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 9.5e-22 108.6 332 32.2
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.6e-21 107.8 332 31.0
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 1.8e-20 104.4 257 30.4
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 3.1e-20 103.6 342 33.0
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 3.1e-20 103.6 362 32.3
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 3.1e-20 103.6 335 30.1
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 5.2e-20 102.8 256 30.5
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 2.0e-19 100.9 258 31.4
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 2.0e-19 100.9 274 38.3
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.0e-19 100.9 332 29.8
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 2.0e-19 100.9 344 32.6
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 5.8e-19 99.4 347 32.9
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.3e-18 98.2 271 35.1
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 2.2e-18 97.4 347 31.7
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.7e-18 96.7 347 30.8
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 4.9e-18 96.3 349 33.2
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 4.9e-18 96.3 231 36.4
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 4.1e-17 93.2 335 30.7
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 4.1e-17 93.2 355 30.1
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 9.2e-17 92.0 347 30.8
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 9.2e-17 92.0 357 29.4
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.6e-16 91.3 360 31.1
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 2.7e-16 90.5 167 41.3
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 2.7e-16 90.5 155 43.2
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 3.5e-16 90.1 160 38.1
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.3e-15 87.4 347 30.3
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 5.0e-15 86.3 317 30.0
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.9e-14 84.3 278 31.7
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 2.5e-14 84.0 348 30.7
unitig_747.g21610 Utricularia gibba HOM05D009485 ORTHO05D006259 2.5e-14 84.0 247 34.4
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 4.3e-14 83.2 357 30.0
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 7.3e-14 82.4 215 35.3
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 1.2e-13 81.6 337 30.3
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 1.6e-13 81.3 351 28.8
Cc05_g09420 Coffea canephora HOM05D009485 ORTHO05D006259 1.6e-13 81.3 193 36.8
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.6e-13 81.3 186 36.0
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 2.1e-13 80.9 354 30.5
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 3.6e-13 80.1 308 28.9
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 3.6e-13 80.1 227 33.0
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 3.6e-13 80.1 245 35.5
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 4.7e-13 79.7 186 35.5
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 6.2e-13 79.3 186 34.9
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 1.4e-12 78.2 336 29.2
CAN.G585.40 Capsicum annuum HOM05D009485 ORTHO05D006259 1.8e-12 77.8 162 44.4
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 1.8e-12 77.8 260 34.2
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 2.3e-12 77.4 316 28.2
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 3.1e-12 77.0 264 31.8
Hma1.2p1_1729F.1_g299610 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 4.0e-12 76.6 374 29.9
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 1.5e-11 74.7 264 29.2
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 1.5e-11 74.7 213 37.6
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 1.5e-11 74.7 356 28.1
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 4.4e-11 73.2 308 28.6
ATR0568G074 Amborella trichopoda HOM05D006785 ORTHO05D006259 9.8e-11 72.0 357 28.9
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 1.3e-10 71.6 361 28.5
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.3e-10 71.6 355 28.2
unitig_46.g18281 Utricularia gibba HOM05D009485 ORTHO05D006259 1.3e-10 71.6 173 34.7
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 1.7e-10 71.2 195 32.3
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.7e-10 71.2 140 39.3
PGSC0003DMG400021282 Solanum tuberosum HOM05D009485 ORTHO05D006259 3.7e-10 70.1 238 34.0
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 4.9e-10 69.7 134 39.6
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 8.3e-10 68.9 355 27.6
Oeu020927.1 Olea europaea HOM05D009485 ORTHO05D006259 8.3e-10 68.9 185 33.5
Solyc10g007780.3 Solanum lycopersicum HOM05D009485 ORTHO05D006259 1.4e-09 68.2 192 33.3
Sopen07g029750 Solanum pennellii HOM05D009485 ORTHO05D006259 2.4e-09 67.4 162 37.0
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 3.2e-09 67.0 144 39.6
MBI07_g07832_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 5.4e-09 66.2 363 27.5
Aqoxy4G00148 Aquilegia oxysepala HOM05D006785 ORTHO05D006259 9.2e-09 65.5 355 28.2
CAN.G1191.3 Capsicum annuum HOM05D009485 ORTHO05D006259 1.2e-08 65.1 181 33.7
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.2e-08 65.1 153 34.0
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 2.1e-08 64.3 285 31.6
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 3.5e-08 63.5 261 29.9
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 4.6e-08 63.2 248 27.8
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 6.0e-08 62.8 219 31.1
Solyc07g056370.3 Solanum lycopersicum HOM05D009485 ORTHO05D006259 7.8e-08 62.4 134 40.3
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 1.7e-07 61.2 154 34.4
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 3.0e-07 60.5 147 36.7
Gohir.D11G228900 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.9e-07 60.1 103 43.7
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.1e-06 58.5 321 27.4
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 1.5e-06 58.2 346 26.3
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 1.9e-06 57.8 138 35.5
CDE07G0721 Ceratophyllum demersum HOM05D050733 ORTHO05D006259 4.3e-06 56.6 114 35.1
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 5.6e-06 56.2 367 25.6
Nitab4.5_0001675g0090 Nicotiana tabacum HOM05D009485 ORTHO05D006259 7.3e-06 55.8 160 36.2
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 9.5e-06 55.5 349 27.2


User provided reference genes

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