Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-139 500.0 257 100.0
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.2e-139 497.3 257 99.6
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.5e-35 154.1 89 78.7
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.5e-35 153.3 152 52.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 5.7e-35 152.1 88 69.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-34 150.6 90 75.6
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.1e-34 150.2 88 75.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.9e-33 145.2 98 65.3
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.5e-32 144.1 88 69.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.5e-32 144.1 89 71.9
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.0e-32 143.7 87 73.6
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 3.4e-32 142.9 87 73.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 3.4e-32 142.9 87 73.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 2.2e-31 140.2 89 67.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.9e-31 139.8 102 60.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 5.0e-31 139.0 87 71.3
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.1e-30 137.9 87 66.7
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.1e-30 137.9 94 67.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.9e-30 137.1 87 66.7
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.9e-30 137.1 89 67.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.5e-30 136.7 89 68.5
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.2e-30 136.3 97 62.9
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.2e-30 136.0 87 65.5
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.2e-30 136.0 87 66.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.2e-30 136.0 89 66.3
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.2e-30 136.0 89 67.4
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.5e-30 135.6 96 64.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 7.2e-30 135.2 89 67.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 9.3e-30 134.8 86 66.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.2e-29 134.4 86 66.3
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.2e-29 134.4 88 62.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-29 134.0 87 66.7
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.6e-29 134.0 89 67.4
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.1e-29 133.7 88 65.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.7e-29 133.3 89 66.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.1e-29 132.1 87 65.5
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.1e-29 132.1 87 65.5
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 6.1e-29 132.1 89 66.3
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.9e-29 131.7 88 67.0
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.9e-29 131.7 88 67.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.0e-28 131.3 86 65.1
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.0e-28 131.3 87 64.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.3e-28 131.0 87 64.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.3e-28 131.0 89 64.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 3.0e-28 129.8 97 55.7
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.9e-28 129.4 87 64.4
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.9e-28 129.4 87 64.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.1e-28 129.0 90 63.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.7e-28 128.6 85 64.7
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 8.7e-28 128.3 93 61.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 8.7e-28 128.3 91 61.5
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.1e-27 127.9 93 61.3
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.5e-27 127.5 97 57.7
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-27 127.5 87 64.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.5e-27 127.5 88 60.2
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.9e-27 127.1 89 61.8
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.3e-27 126.3 94 59.6
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.3e-27 126.3 94 59.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.4e-27 125.2 87 62.1
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 9.7e-27 124.8 90 62.2
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 9.7e-27 124.8 94 60.6
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.3e-26 124.4 87 62.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.3e-26 124.4 90 61.1
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.3e-26 124.4 90 62.2
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-26 123.6 87 62.1
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.8e-26 123.2 90 55.6
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.7e-26 122.9 94 57.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 6.3e-26 122.1 94 58.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.3e-26 122.1 95 55.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 6.3e-26 122.1 92 57.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.4e-25 120.9 88 62.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.8e-25 120.6 98 53.1
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.8e-25 120.6 94 57.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.8e-25 120.6 88 62.5
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.4e-25 120.2 94 55.3
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.4e-25 120.2 89 53.9
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.1e-25 119.8 95 55.8
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.1e-25 119.8 93 57.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.1e-25 119.8 87 59.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.1e-25 119.4 86 58.1
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 9.1e-25 118.2 87 59.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.5e-24 115.9 87 58.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 7.7e-24 115.2 89 57.3
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 7.7e-24 115.2 93 52.7
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.7e-23 114.0 90 57.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.2e-23 113.6 96 53.1
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.9e-23 113.2 89 56.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.8e-23 112.8 95 52.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 5.0e-23 112.5 88 52.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.2e-22 109.8 89 56.2
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.2e-21 107.8 89 56.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.6e-21 107.5 89 56.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.0e-20 104.8 88 51.1
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 5.1e-20 102.4 87 50.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 5.1e-20 102.4 88 50.0
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.1e-20 102.4 100 46.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.0e-19 100.5 87 49.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 4.1e-17 92.8 89 44.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 4.1e-17 92.8 89 44.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.1e-17 92.8 89 44.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-16 91.3 89 44.9
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-16 91.3 89 43.8
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-16 90.9 89 43.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.7e-16 88.6 90 45.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.0e-15 88.2 85 48.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.3e-15 87.8 90 45.6
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.2e-15 87.0 92 44.6
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.8e-15 86.3 88 44.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.1e-14 84.7 85 44.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 4.2e-14 82.8 88 44.3
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.7e-13 80.1 85 41.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.7e-13 79.3 79 46.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.1e-13 79.0 91 40.7
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 7.9e-13 78.6 125 39.2
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.8e-12 77.4 81 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 6.7e-12 75.5 79 45.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.3e-10 71.2 64 57.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 8.2e-10 68.6 54 53.7
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-09 67.4 125 32.8
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.4e-09 67.0 80 41.2
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.0e-09 65.5 82 37.8
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.5e-08 63.2 97 34.0
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.5e-08 63.2 97 34.0
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.5e-08 63.2 97 34.0
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.5e-08 63.2 82 36.6
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-07 61.6 97 32.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.0e-07 61.6 97 32.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 7.2e-06 55.5 94 33.0


User provided reference genes

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