Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047069 Camellia sinensis var. sinensis HOM05D001520 ORTHO05D001373 1.7e-42 175.6 90 100.0
CSS0032131 Camellia sinensis var. sinensis HOM05D001520 ORTHO05D001373 3.1e-36 154.8 117 74.4
Rhsim01G0212200 Rhododendron simsii HOM05D001520 ORTHO05D001373 1.2e-24 116.3 116 56.0
Dinv34703 Davidia involucrata HOM05D001520 ORTHO05D001373 2.5e-22 108.6 117 53.0
GSVIVG01031507001 Vitis vinifera HOM05D001520 ORTHO05D001373 4.7e-21 104.4 118 53.4
Cc01_g10550 Coffea canephora HOM05D001520 ORTHO05D001373 2.4e-20 102.1 118 52.5
Oeu018374.1 Olea europaea HOM05D001520 ORTHO05D001373 1.5e-19 99.4 118 50.0
TAR623G1087 Trochodendron aralioides HOM05D001520 ORTHO05D001373 2.6e-19 98.6 117 47.9
QL01p015848 Quercus lobata HOM05D001520 ORTHO05D001373 7.6e-19 97.1 119 50.4
Oeu018482.1 Olea europaea HOM05D001520 ORTHO05D001373 1.7e-18 95.9 117 47.9
Nitab4.5_0002186g0060 Nicotiana tabacum HOM05D001520 ORTHO05D001373 3.8e-18 94.7 116 49.1
Peaxi162Scf00351g00051 Petunia axillaris HOM05D001520 ORTHO05D001373 6.4e-18 94.0 119 47.9
RcHm_v2.0_Chr5g0057781 Rosa chinensis HOM05D001520 ORTHO05D001373 6.4e-18 94.0 117 53.0
CSS0036444 Camellia sinensis var. sinensis HOM05D001520 ORTHO05D001373 4.2e-17 91.3 117 48.7
Duzib168G1009 Durio zibethinus HOM05D001520 ORTHO05D001373 4.2e-17 91.3 117 47.9
CiPaw.13G118700 Carya illinoinensis HOM05D001520 ORTHO05D001373 1.6e-16 89.4 115 47.0
Prupe.6G108500 Prunus persica HOM05D001520 ORTHO05D001373 1.6e-16 89.4 118 48.3
MD00G1033700 Malus domestica HOM05D001520 ORTHO05D001373 2.1e-16 89.0 118 48.3
Hma1.2p1_0344F.1_g131070 Hydrangea macrophylla HOM05D001520 ORTHO05D001373 2.7e-16 88.6 116 45.7
Duzib170G1023 Durio zibethinus HOM05D001520 ORTHO05D001373 4.6e-16 87.8 117 47.0
Solyc11g069093.1 Solanum lycopersicum HOM05D001520 ORTHO05D001373 6.6e-15 84.0 122 43.4
ClCG03G002720 Citrullus lanatus HOM05D001520 ORTHO05D001373 8.7e-15 83.6 119 44.5
MELO3C004966.2 Cucumis melo HOM05D001520 ORTHO05D001373 8.7e-15 83.6 111 45.0
CsaV3_1G013410 Cucumis sativus L. HOM05D001520 ORTHO05D001373 8.7e-15 83.6 111 45.0
Prupe.6G108300 Prunus persica HOM05D001520 ORTHO05D001373 1.1e-14 83.2 118 44.1
COL.COLO4_34700 Corchorus olitorius HOM05D001520 ORTHO05D001373 1.5e-14 82.8 121 46.3
FAN16G3511 Fragaria x ananassa HOM05D001520 ORTHO05D001373 1.9e-14 82.4 115 44.3
Aqoxy1G01162 Aquilegia oxysepala HOM05D001520 ORTHO05D001373 2.5e-14 82.0 110 44.5
MELO3C026914.2 Cucumis melo HOM05D001520 ORTHO05D001373 2.5e-14 82.0 121 43.0
Sopen11g027820 Solanum pennellii HOM05D001520 ORTHO05D001373 2.5e-14 82.0 122 43.4
FAN21G3490 Fragaria x ananassa HOM05D001520 ORTHO05D001373 4.3e-14 81.3 115 44.3
Lalb_Chr24g0394831 Lupinus albus HOM05D001520 ORTHO05D001373 4.3e-14 81.3 120 45.8
Nn2g11584 Nelumbo nucifera HOM05D001520 ORTHO05D001373 4.3e-14 81.3 111 44.1
Sed0002400 Sechium edule HOM05D001520 ORTHO05D001373 4.3e-14 81.3 121 44.6
FvH4_3g31140 Fragaria vesca HOM05D016449 ORTHO05D001373 7.3e-14 80.5 115 44.3
CsaV3_6G014200 Cucumis sativus L. HOM05D001520 ORTHO05D001373 9.6e-14 80.1 121 43.0
ECA233G1003 Erigeron canadensis HOM05D001520 ORTHO05D001373 9.6e-14 80.1 110 44.5
PGSC0003DMG400008070 Solanum tuberosum HOM05D001520 ORTHO05D001373 9.6e-14 80.1 122 42.6
DCAR_006107 Daucus carota HOM05D001520 ORTHO05D001373 1.2e-13 79.7 116 42.2
Lsat_1_v5_gn_1_63001 Lactuca sativa HOM05D001520 ORTHO05D001373 1.2e-13 79.7 117 44.4
Prupe.6G108400 Prunus persica HOM05D001520 ORTHO05D001373 1.2e-13 79.7 117 44.4
Nitab4.5_0000106g0420 Nicotiana tabacum HOM05D001520 ORTHO05D001373 1.6e-13 79.3 118 45.8
Sed0013058 Sechium edule HOM05D001520 ORTHO05D001373 1.6e-13 79.3 111 42.3
Nn2g13776 Nelumbo nucifera HOM05D001520 ORTHO05D001373 3.6e-13 78.2 114 40.4
Atru.chr3.3550 Acer truncatum HOM05D001520 ORTHO05D001373 4.7e-13 77.8 116 42.2
FvH4_3g31150 Fragaria vesca HOM05D001520 ORTHO05D001373 4.7e-13 77.8 114 43.9
Thecc.09G348300 Theobroma cacao HOM05D001520 ORTHO05D001373 4.7e-13 77.8 116 43.1
EL10As6g23706 Beta vulgaris HOM05D001520 ORTHO05D001373 6.2e-13 77.4 117 39.3
Actinidia03703 Actinidia chinensis HOM05D001520 ORTHO05D001373 8.1e-13 77.0 95 47.4
Ciclev10030059m.g Citrus clementina HOM05D001520 ORTHO05D001373 8.1e-13 77.0 116 43.1
TAR633G0735 Trochodendron aralioides HOM05D001520 ORTHO05D001373 8.1e-13 77.0 117 40.2
ClCG02G021410 Citrullus lanatus HOM05D001520 ORTHO05D001373 1.8e-12 75.9 123 42.3
HanXRQChr01g0017891 Helianthus annuus HOM05D001520 ORTHO05D001373 1.8e-12 75.9 117 41.9
Nitab4.5_0002044g0010 Nicotiana tabacum HOM05D001520 ORTHO05D001373 1.8e-12 75.9 117 45.3
CAN.G546.8 Capsicum annuum HOM05D001520 ORTHO05D001373 3.1e-12 75.1 117 41.0
HanXRQChr13g0396601 Helianthus annuus HOM05D001520 ORTHO05D001373 4.0e-12 74.7 120 42.5
MBI18_g10198_MAGBIO Magnolia biondii HOM05D001520 ORTHO05D001373 4.0e-12 74.7 124 37.9
HanXRQChr01g0017911 Helianthus annuus HOM05D001520 ORTHO05D001373 5.3e-12 74.3 117 41.9
MD11G1145300 Malus domestica HOM05D001520 ORTHO05D001373 6.9e-12 73.9 118 44.1
PGSC0003DMG400007162 Solanum tuberosum HOM05D001520 ORTHO05D001373 9.0e-12 73.6 116 42.2
PGR094G0001 Punica granatum HOM05D001520 ORTHO05D001373 1.2e-11 73.2 109 45.0
PGR094G0003 Punica granatum HOM05D001520 ORTHO05D001373 1.2e-11 73.2 109 45.0
PGR094G0005 Punica granatum HOM05D001520 ORTHO05D001373 1.2e-11 73.2 109 45.0
PGR102G0286 Punica granatum HOM05D001520 ORTHO05D001373 1.2e-11 73.2 109 45.0
PGR102G1100 Punica granatum HOM05D001520 ORTHO05D001373 1.2e-11 73.2 109 45.0
Glyma.12G177400 Glycine max HOM05D001520 ORTHO05D001373 2.0e-11 72.4 121 40.5
Gohir.A13G232400 Gossypium hirsutum HOM05D001520 ORTHO05D001373 4.4e-11 71.2 116 42.2
HanXRQChr11g0346191 Helianthus annuus HOM05D001520 ORTHO05D001373 7.6e-11 70.5 115 39.1
HanXRQChr11g0346201 Helianthus annuus HOM05D001520 ORTHO05D001373 9.9e-11 70.1 115 38.3
CAN.G1755.6 Capsicum annuum HOM05D001520 ORTHO05D001373 1.3e-10 69.7 111 41.4
Gohir.D13G238000 Gossypium hirsutum HOM05D001520 ORTHO05D001373 1.3e-10 69.7 116 41.4
Gorai.013G268800 Gossypium raimondii HOM05D001520 ORTHO05D001373 1.7e-10 69.3 116 41.4
TWI31G1140 Tripterygium wilfordii HOM05D001520 ORTHO05D001373 1.7e-10 69.3 115 40.9
Ciclev10030078m.g Citrus clementina HOM05D001520 ORTHO05D001373 2.2e-10 68.9 120 41.7
Manes.11G150700 Manihot esculenta HOM05D001520 ORTHO05D001373 2.2e-10 68.9 108 40.7
Ah.14g088460 Amaranthus hybridus HOM05D001520 ORTHO05D001373 4.9e-10 67.8 113 38.1
ECA248G3335 Erigeron canadensis HOM05D001520 ORTHO05D001373 4.9e-10 67.8 116 41.4
THA.LOC104826382 Tarenaya hassleriana HOM05D001520 ORTHO05D001373 6.4e-10 67.4 112 42.0
VMungo1080G0562 Vigna mungo HOM05D001520 ORTHO05D001373 8.4e-10 67.0 117 41.0
Glyma.13G323300 Glycine max HOM05D001520 ORTHO05D001373 1.4e-09 66.2 103 38.8
TPR.G11527 Trifolium pratense HOM05D001520 ORTHO05D001373 1.4e-09 66.2 122 42.6
AUR62012584 Chenopodium quinoa HOM05D001520 ORTHO05D001373 1.9e-09 65.9 116 33.6
Lsat_1_v5_gn_6_43700 Lactuca sativa HOM05D001520 ORTHO05D001373 1.9e-09 65.9 121 39.7
TWI79G1515 Tripterygium wilfordii HOM05D001520 ORTHO05D001373 4.2e-09 64.7 115 39.1
Psat0s3241g0120 Pisum sativum HOM05D001520 ORTHO05D001373 5.4e-09 64.3 109 41.3
Phvul.005G131801 Phaseolus vulgaris HOM05D001520 ORTHO05D001373 7.1e-09 63.9 118 39.0
Lj1C207T2 Lonicera japonica HOM05D001520 ORTHO05D001373 9.3e-09 63.5 79 43.0
AUR62014617 Chenopodium quinoa HOM05D001520 ORTHO05D001373 1.2e-08 63.2 116 33.6
RcHm_v2.0_Chr5g0057771 Rosa chinensis HOM05D001520 ORTHO05D001373 1.2e-08 63.2 110 40.9
Carub.0004s0885 Capsella rubella HOM05D001520 ORTHO05D001373 1.6e-08 62.8 120 38.3
PSO063G5329 Papaver somniferum HOM05D001520 ORTHO05D001373 1.6e-08 62.8 122 34.4
Migut.N02572 Erythranthe guttata HOM05D001520 ORTHO05D001373 2.1e-08 62.4 113 38.1
Sopen06g031350 Solanum pennellii HOM05D001520 ORTHO05D001373 2.7e-08 62.0 78 42.3
PSO339G1978 Papaver somniferum HOM05D001520 ORTHO05D001373 3.5e-08 61.6 122 34.4
Peaxi162Scf01159g00023 Petunia axillaris HOM05D001520 ORTHO05D001373 3.5e-08 61.6 85 40.0
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.6e-08 61.2 62 58.1
Ca_01387_v3 Cicer arietinum L. HOM05D001520 ORTHO05D001373 6.0e-08 60.8 108 39.8
Sc05g0008420 Simmondsia chinensis HOM05D001520 ORTHO05D001373 7.8e-08 60.5 112 35.7
Solyc06g074950.1 Solanum lycopersicum HOM05D001520 ORTHO05D001373 7.8e-08 60.5 78 41.0
Atru.chr3.3549 Acer truncatum HOM05D001520 ORTHO05D001373 1.0e-07 60.1 72 56.9
CARHR120820 Cardamine hirsuta HOM05D001520 ORTHO05D001373 1.7e-07 59.3 120 36.7
Phvul.011G083900 Phaseolus vulgaris HOM05D001520 ORTHO05D001373 1.7e-07 59.3 119 36.1
Thhalv10017524m.g Eutrema salsugineum HOM05D001520 ORTHO05D001373 3.0e-07 58.5 119 37.0
Migut.D02260 Erythranthe guttata HOM05D001520 ORTHO05D001373 3.9e-07 58.2 114 36.8
Medtr2g095430 Medicago truncatula HOM05D001520 ORTHO05D001373 3.9e-07 58.2 108 36.1
Ciclev10013732m.g Citrus clementina HOM05D001520 ORTHO05D001373 5.1e-07 57.8 110 33.6
CANSAT54G2630 Cannabis sativa HOM05D001520 ORTHO05D001373 6.6e-07 57.4 119 35.3
Potri.010G226400 Populus trichocarpa HOM05D001520 ORTHO05D001373 6.6e-07 57.4 118 34.7
VMungo1127G0152 Vigna mungo HOM05D001520 ORTHO05D001373 6.6e-07 57.4 119 35.3
GSVIVG01031508001 Vitis vinifera HOM05D001520 ORTHO05D001373 1.1e-06 56.6 71 42.3
Atru.chr8.1815 Acer truncatum HOM05D001520 ORTHO05D001373 1.5e-06 56.2 104 32.7
TWI53G1569 Tripterygium wilfordii HOM05D001520 ORTHO05D001373 1.5e-06 56.2 114 35.1
Sp4g10880 Schrenkiella parvula HOM05D001520 ORTHO05D001373 2.5e-06 55.5 112 36.6
TAR636G1002 Trochodendron aralioides HOM05D001520 ORTHO05D001373 2.5e-06 55.5 113 31.9
A03p26410 Brassica napus HOM05D001520 ORTHO05D001373 3.3e-06 55.1 114 36.0
BraA03t11856Z Brassica rapa HOM05D001520 ORTHO05D001373 3.3e-06 55.1 114 36.0
RcHm_v2.0_Chr3g0470231 Rosa chinensis HOM05D001520 ORTHO05D001373 3.3e-06 55.1 106 36.8
arahy.Tifrunner.gnm1.ann1.R1Y5X8 Arachis hypogaea HOM05D001520 ORTHO05D001373 4.3e-06 54.7 121 34.7
C03p31710 Brassica napus HOM05D001520 ORTHO05D001373 4.3e-06 54.7 120 35.0
HanXRQChr08g0215431 Helianthus annuus HOM05D001520 ORTHO05D001373 4.3e-06 54.7 97 36.1
AL4G22080 Arabidopsis lyrata HOM05D001520 ORTHO05D001373 5.6e-06 54.3 112 35.7
BcaB01g03089 Brassica carinata HOM05D001520 ORTHO05D001373 5.6e-06 54.3 120 35.0
BcaC02g10942 Brassica carinata HOM05D001520 ORTHO05D001373 5.6e-06 54.3 112 36.6
C04p23440 Brassica napus HOM05D001520 ORTHO05D001373 5.6e-06 54.3 112 36.6
BolC4t23846H Brassica oleracea HOM05D001520 ORTHO05D001373 5.6e-06 54.3 112 36.6
FAN05G2097 Fragaria x ananassa HOM05D001520 ORTHO05D001373 5.6e-06 54.3 106 36.8
FAN16G0986 Fragaria x ananassa HOM05D001520 ORTHO05D001373 5.6e-06 54.3 66 53.0
MBI18_g38339_MAGBIO Magnolia biondii HOM05D001520 ORTHO05D001373 5.6e-06 54.3 101 34.7
Nn2g11594 Nelumbo nucifera HOM05D001520 ORTHO05D001373 5.6e-06 54.3 116 32.8
Atru.chr8.1816 Acer truncatum HOM05D001520 ORTHO05D001373 7.3e-06 53.9 112 28.6
AT2G28085 Arabidopsis thaliana HOM05D001520 ORTHO05D001373 7.3e-06 53.9 112 36.6
CANSAT80G0144 Cannabis sativa HOM05D001520 ORTHO05D001373 7.3e-06 53.9 109 32.1
FvH4_6g16380 Fragaria vesca HOM05D001520 ORTHO05D001373 7.3e-06 53.9 106 36.8
FAN14G1299 Fragaria x ananassa HOM05D001520 ORTHO05D001373 7.3e-06 53.9 106 36.8
Thecc.09G348200 Theobroma cacao HOM05D001520 ORTHO05D001373 7.3e-06 53.9 87 33.3
BcaC01g04957 Brassica carinata HOM05D001520 ORTHO05D001373 9.6e-06 53.5 114 35.1
A07p18620 Brassica napus HOM05D001520 ORTHO05D001373 9.6e-06 53.5 112 36.6
BolC3t15514H Brassica oleracea HOM05D001520 ORTHO05D001373 9.6e-06 53.5 114 35.1
BraA07t29575Z Brassica rapa HOM05D001520 ORTHO05D001373 9.6e-06 53.5 112 36.6
MELO3C024464.2 Cucumis melo HOM05D001520 ORTHO05D001373 9.6e-06 53.5 103 33.0
Glyma.03G183000 Glycine max HOM05D001520 ORTHO05D001373 9.6e-06 53.5 97 34.0
Glyma.12G079300 Glycine max HOM05D001520 ORTHO05D001373 9.6e-06 53.5 120 34.2
Prupe.6G232300 Prunus persica HOM05D001520 ORTHO05D001373 9.6e-06 53.5 118 32.2


User provided reference genes

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