Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.9e-249 865.9 620 100.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.9e-212 741.1 618 92.7
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 1.2e-187 660.6 619 85.6
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.5e-182 643.7 618 84.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 4.4e-174 615.5 617 81.5
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.7e-174 615.1 619 83.4
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 8.5e-170 601.3 661 73.7
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 9.4e-169 597.8 619 79.2
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 4.0e-167 592.4 618 79.4
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 1.1e-166 590.9 625 79.5
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 2.0e-166 590.1 610 79.5
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 2.0e-166 590.1 615 79.7
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.3e-166 589.3 623 79.0
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 3.7e-165 585.9 631 78.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.2e-165 584.7 622 77.7
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 4.1e-164 582.4 618 79.1
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 9.1e-164 581.3 624 79.0
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 2.9e-162 576.2 613 79.8
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 3.8e-162 575.9 617 79.7
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 5.0e-162 575.5 615 79.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.1e-161 574.3 404 75.2
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.1e-161 574.3 616 77.8
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.9e-161 573.5 617 78.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.9e-161 573.5 617 77.8
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 2.5e-161 573.2 404 74.5
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 3.2e-161 572.8 619 78.5
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 3.2e-161 572.8 402 75.1
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.2e-161 572.8 622 77.2
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 5.5e-161 572.0 404 73.8
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 7.2e-161 571.6 405 74.6
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 7.2e-161 571.6 629 77.1
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 9.4e-161 571.2 404 74.3
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.2e-160 570.9 627 77.4
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 1.6e-160 570.5 617 79.1
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.6e-160 570.5 630 77.1
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 1.6e-160 570.5 613 78.6
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.1e-160 570.1 622 77.2
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.7e-160 569.7 615 78.7
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.6e-160 569.3 631 77.3
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 8.0e-160 568.2 630 77.1
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 1.0e-159 567.8 613 76.5
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.4e-159 567.4 619 77.4
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.0e-159 565.8 623 78.8
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 8.8e-159 564.7 619 77.9
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.2e-158 564.3 615 78.0
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.5e-158 563.9 616 77.1
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 2.6e-158 563.1 612 77.9
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.4e-158 562.8 405 73.3
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 4.4e-158 562.4 401 73.6
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.7e-158 562.0 401 74.3
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.7e-157 560.5 617 78.3
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 6.3e-157 558.5 402 74.9
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 1.8e-156 557.0 608 64.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 2.4e-156 556.6 620 76.3
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 9.1e-156 554.7 613 77.5
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 9.1e-156 554.7 628 76.4
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 6.5e-154 548.5 615 77.1
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 4.2e-153 545.8 613 76.8
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.7e-152 543.1 615 74.0
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 6.1e-152 542.0 612 77.5
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.1e-152 542.0 410 72.0
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 8.0e-152 541.6 414 70.3
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 5.2e-151 538.9 603 75.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 2.6e-150 536.6 410 71.7
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 7.5e-150 535.0 617 75.9
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.7e-149 533.9 621 74.9
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.7e-149 533.9 410 71.5
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.4e-148 530.8 410 71.0
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 1.8e-148 530.4 649 73.2
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.0e-147 526.9 405 69.4
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.5e-147 525.8 575 80.3
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 3.3e-145 519.6 405 69.1
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.6e-144 517.3 613 74.7
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 3.6e-144 516.2 404 69.3
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.8e-143 513.8 404 69.3
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.8e-143 513.8 404 69.3
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.3e-143 513.5 553 82.1
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 4.4e-142 509.2 401 69.1
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 4.4e-142 509.2 401 69.1
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 2.9e-141 506.5 404 68.1
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 6.4e-141 505.4 612 73.9
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 4.1e-140 502.7 399 66.4
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.5e-137 494.2 406 67.0
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.9e-137 493.8 401 68.3
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.9e-137 493.8 404 66.3
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.2e-136 491.1 406 65.0
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.8e-136 490.0 611 61.9
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 3.6e-136 489.6 612 72.2
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.0e-135 488.0 405 66.2
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.5e-134 484.2 397 67.0
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 2.6e-134 483.4 405 65.9
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.3e-133 481.1 406 65.5
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.7e-133 479.6 405 64.9
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.1e-132 478.0 400 66.2
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.0e-130 471.5 400 65.2
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 2.5e-129 466.8 406 63.8
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 2.5e-129 466.8 396 67.2
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 5.6e-129 465.7 496 55.4
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 7.3e-129 465.3 406 63.8
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.4e-126 456.4 575 73.9
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.3e-125 454.5 285 86.7
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.6e-123 446.0 672 62.2
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.0e-122 444.9 383 64.8
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 8.6e-122 441.8 402 60.4
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.1e-121 441.4 334 71.6
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 7.1e-116 422.2 360 67.8
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 7.6e-110 402.1 404 57.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.6e-107 394.4 409 56.7
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.6e-104 384.4 279 72.0
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 6.4e-101 372.5 417 51.6
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 5.4e-100 369.4 652 62.0
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 2.4e-95 354.0 409 49.9
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 2.6e-94 350.5 258 74.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 4.9e-93 346.3 407 49.9
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.3e-81 307.0 532 68.6
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.3e-64 251.9 225 64.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 9.1e-63 245.7 194 69.6
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 2.3e-58 231.1 271 55.7
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 2.4e-55 221.1 567 48.3
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.5e-52 211.8 287 50.2
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 2.7e-46 191.0 141 70.9
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.9e-45 187.6 143 69.9
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 1.5e-41 175.3 425 32.7
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 7.5e-41 172.9 220 49.5
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.4e-39 166.8 185 54.6
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.5e-36 158.7 146 52.7
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 3.2e-36 157.5 292 88.4
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.3e-34 151.4 112 67.9
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 8.8e-34 149.4 446 28.9
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 2.8e-32 144.4 115 68.7
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.2e-30 139.0 130 53.8
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.0e-29 133.7 143 55.9
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 5.6e-28 130.2 503 25.8
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 9.5e-28 129.4 289 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 4.7e-27 127.1 147 46.9
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.5e-25 119.8 73 86.3
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 1.1e-20 105.9 281 36.7
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-16 92.4 75 64.0
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.9e-16 91.3 107 43.0
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 6.6e-13 80.1 57 68.4
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.5e-12 79.0 48 83.3
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 2.8e-11 74.7 51 72.5
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 4.0e-10 70.9 454 23.1
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.4e-09 67.4 49 73.5
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 1.1e-07 62.8 37 86.5
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.4e-07 60.5 43 72.1
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 9.2e-07 59.7 49 69.4
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 3.5e-06 57.8 49 67.3


User provided reference genes

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