Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046906 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 3.5e-94 348.2 169 100.0
CSS0026232 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.1e-86 322.4 169 92.9
CSS0037658 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.8e-59 232.3 157 77.1
Cfa018483 Carpinus fangiana HOM05D000823 ORTHO05D000088 1.9e-23 113.2 158 41.1
Haze_17590 Corylus avellana HOM05D000823 ORTHO05D000088 1.2e-22 110.5 138 42.8
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 4.7e-22 108.6 150 40.0
Prupe.1G388200 Prunus persica HOM05D000823 ORTHO05D000088 8.0e-22 107.8 150 41.3
CiPaw.15G066400 Carya illinoinensis HOM05D000823 ORTHO05D000088 1.1e-21 107.5 123 46.3
Rhsim07G0234100 Rhododendron simsii HOM05D000823 ORTHO05D000088 1.2e-20 104.0 125 43.2
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 1.5e-20 103.6 145 40.7
Potri.014G036800 Populus trichocarpa HOM05D000823 ORTHO05D000088 3.4e-20 102.4 123 44.7
Nn6g32134 Nelumbo nucifera HOM05D000823 ORTHO05D000088 4.4e-20 102.1 141 42.6
Lj5g0027331 Lotus japonicus HOM05D000823 ORTHO05D000088 1.3e-19 100.5 145 41.4
Nn6g32136 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.7e-19 100.1 122 44.3
Cpa.g.sc357.1 Carica papaya HOM05D000823 ORTHO05D000088 2.2e-19 99.8 150 38.7
HanXRQChr04g0104181 Helianthus annuus HOM05D000823 ORTHO05D000088 2.2e-19 99.8 146 39.7
Manes.05G168900 Manihot esculenta HOM05D000823 ORTHO05D000088 3.7e-19 99.0 140 40.7
Hma1.2p1_0023F.1_g015270 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 8.3e-19 97.8 145 39.3
GSVIVG01009586001 Vitis vinifera HOM05D000823 ORTHO05D000088 8.3e-19 97.8 143 38.5
Hma1.2p1_0260F.1_g104520 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 1.1e-18 97.4 153 36.6
Lsat_1_v5_gn_1_19200 Lactuca sativa HOM05D000823 ORTHO05D000088 1.1e-18 97.4 157 37.6
Sabra14G0026500 Salix brachista HOM05D000823 ORTHO05D000088 1.9e-18 96.7 123 43.1
Glyma.14G079200 Glycine max HOM05D000823 ORTHO05D000088 3.2e-18 95.9 146 38.4
Actinidia38035 Actinidia chinensis HOM05D000823 ORTHO05D000088 5.4e-18 95.1 145 40.0
Sc15g0006570 Simmondsia chinensis HOM05D000823 ORTHO05D000088 1.6e-17 93.6 134 39.6
Nn5g29398 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.1e-17 93.2 125 40.8
MD15G1034200 Malus domestica HOM05D000823 ORTHO05D000088 2.7e-17 92.8 157 36.3
RcHm_v2.0_Chr6g0300031 Rosa chinensis HOM05D000823 ORTHO05D000088 2.7e-17 92.8 126 39.7
Thecc.08G016800 Theobroma cacao HOM05D000823 ORTHO05D000088 2.7e-17 92.8 149 37.6
ECA247G3085 Erigeron canadensis HOM05D000823 ORTHO05D000088 3.5e-17 92.4 149 37.6
Migut.C00649 Erythranthe guttata HOM05D000823 ORTHO05D000088 4.6e-17 92.0 162 35.8
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 4.6e-17 92.0 137 38.7
FAN27G1265 Fragaria x ananassa HOM05D000823 ORTHO05D000088 6.0e-17 91.7 137 38.7
MD08G1039600 Malus domestica HOM05D000823 ORTHO05D000088 1.3e-16 90.5 144 38.9
FAN15G0917 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.3e-16 89.7 137 38.7
VMungo0647G0862 Vigna mungo HOM05D000823 ORTHO05D000088 3.0e-16 89.4 147 38.1
EL10Ac1g01749 Beta vulgaris HOM05D000823 ORTHO05D000088 3.9e-16 89.0 126 40.5
CANSAT25G0071 Cannabis sativa HOM05D000823 ORTHO05D000088 6.6e-16 88.2 148 35.8
Duzib093G1908 Durio zibethinus HOM05D000823 ORTHO05D000088 6.6e-16 88.2 135 38.5
COL.COLO4_26426 Corchorus olitorius HOM05D000823 ORTHO05D000088 1.1e-15 87.4 152 36.2
Psat6g011480 Pisum sativum HOM05D000823 ORTHO05D000088 1.9e-15 86.7 126 38.9
Ca_13317_v3 Cicer arietinum L. HOM05D000823 ORTHO05D000088 2.5e-15 86.3 148 35.8
SGA_v2.0_scaffold82G26218 Striga asiatica HOM05D000823 ORTHO05D000088 4.3e-15 85.5 169 33.7
Nn8g40849 Nelumbo nucifera HOM05D000823 ORTHO05D000088 5.6e-15 85.1 146 37.7
Gohir.D02G093100 Gossypium hirsutum HOM05D000823 ORTHO05D000088 7.3e-15 84.7 150 36.0
Gorai.005G105400 Gossypium raimondii HOM05D000823 ORTHO05D000088 7.3e-15 84.7 150 36.0
Nitab4.5_0000068g0140 Nicotiana tabacum HOM05D000823 ORTHO05D000088 7.3e-15 84.7 147 36.1
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 7.3e-15 84.7 149 35.6
SalBow7G0768 Salvia bowleyana HOM05D000823 ORTHO05D000088 7.3e-15 84.7 142 35.2
Hund26609 Selenicereus undatus HOM05D000823 ORTHO05D000088 7.3e-15 84.7 135 37.0
TPR.G13699 Trifolium pratense HOM05D000823 ORTHO05D000088 1.2e-14 84.0 126 38.1
Medtr1g021270 Medicago truncatula HOM05D000823 ORTHO05D000088 1.6e-14 83.6 126 38.1
Peaxi162Scf01514g00024 Petunia axillaris HOM05D000823 ORTHO05D000088 2.1e-14 83.2 127 37.8
Atru.chr13.594 Acer truncatum HOM05D000823 ORTHO05D000088 6.2e-14 81.6 118 36.4
Phvul.001G018500 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 6.2e-14 81.6 129 38.0
TWI12G0966 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 6.2e-14 81.6 124 39.5
MSTRG.1316 Avicennia marina HOM05D000823 ORTHO05D000088 1.4e-13 80.5 156 34.6
Cc10_g03680 Coffea canephora HOM05D000823 ORTHO05D000088 3.1e-13 79.3 123 39.0
Solyc04g079590.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 3.1e-13 79.3 149 34.2
Eucgr.F02399 Eucalyptus grandis HOM05D000823 ORTHO05D000088 4.0e-13 79.0 118 37.3
Lalb_Chr22g0355281 Lupinus albus HOM05D000823 ORTHO05D000088 4.0e-13 79.0 129 34.9
Glyma.17G245900 Glycine max HOM05D000823 ORTHO05D000088 5.2e-13 78.6 122 36.9
Gohir.A03G116300 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.2e-12 77.4 142 35.2
vmacro04480 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 1.2e-12 77.4 106 38.7
MELO3C018249.2 Cucumis melo HOM05D000823 ORTHO05D000088 1.5e-12 77.0 116 38.8
arahy.Tifrunner.gnm1.ann1.8D6Z2X Arachis hypogaea HOM05D000823 ORTHO05D000088 2.0e-12 76.6 146 33.6
arahy.Tifrunner.gnm1.ann1.NFB9X0 Arachis hypogaea HOM05D000823 ORTHO05D000088 2.0e-12 76.6 146 33.6
MBI16_g19884_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 2.0e-12 76.6 108 37.0
Ciclev10000881m.g Citrus clementina HOM05D000823 ORTHO05D000088 3.4e-12 75.9 123 36.6
PGR031G0338 Punica granatum HOM05D000823 ORTHO05D000088 4.4e-12 75.5 118 34.7
THA.LOC104803403 Tarenaya hassleriana HOM05D000823 ORTHO05D000088 4.4e-12 75.5 116 39.7
ClCG05G019470 Citrullus lanatus HOM05D000823 ORTHO05D000088 7.5e-12 74.7 127 38.6
CAN.G371.85 Capsicum annuum HOM05D000823 ORTHO05D000088 9.9e-12 74.3 164 32.3
AUR62033880 Chenopodium quinoa HOM05D000823 ORTHO05D000088 2.9e-11 72.8 109 38.5
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 3.7e-11 72.4 123 36.6
DCAR_012760 Daucus carota HOM05D000823 ORTHO05D000088 1.4e-10 70.5 125 34.4
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 3.2e-10 69.3 142 35.9
PGR083G0587 Punica granatum HOM05D000823 ORTHO05D000088 9.2e-10 67.8 115 36.5
ATR0796G188 Amborella trichopoda HOM05D000823 ORTHO05D000088 1.6e-09 67.0 103 31.1
Peaxi162Scf00392g00315 Petunia axillaris HOM05D000823 ORTHO05D000088 3.5e-09 65.9 144 33.3
Sopen04g033170 Solanum pennellii HOM05D000823 ORTHO05D000088 3.5e-09 65.9 93 41.9
PGR083G0539 Punica granatum HOM05D000823 ORTHO05D000088 2.3e-08 63.2 108 34.3
CAN.G1342.9 Capsicum annuum HOM05D000888 ORTHO05D000740 3.0e-08 62.8 139 31.7
Peaxi162Scf00192g01414 Petunia axillaris HOM05D000888 ORTHO05D000740 3.9e-08 62.4 99 38.4
CAN.G1238.29 Capsicum annuum HOM05D000888 ORTHO05D000740 5.1e-08 62.0 129 31.8
FAN18G2538 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.1e-08 62.0 120 30.0
CAN.G673.5 Capsicum annuum HOM05D000888 ORTHO05D000740 6.6e-08 61.6 141 29.8
MD08G1039500 Malus domestica HOM05D000823 ORTHO05D000088 6.6e-08 61.6 91 44.0
Nitab4.5_0000555g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.1e-07 60.8 128 32.0
Nitab4.5_0008877g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.1e-07 60.8 120 32.5
Prupe.4G178000 Prunus persica HOM05D000823 ORTHO05D000088 1.1e-07 60.8 78 43.6
Prupe.4G206300 Prunus persica HOM05D000823 ORTHO05D000088 1.1e-07 60.8 78 43.6
CAN.G241.28 Capsicum annuum HOM05D000888 ORTHO05D000740 1.5e-07 60.5 117 34.2
FAN08G1659 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.9e-07 60.1 89 33.7
Nn8g39858 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.5e-07 59.7 117 34.2
Nitab4.5_0000555g0070 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.5e-07 59.7 121 30.6
Sopen08g002190 Solanum pennellii HOM05D000888 ORTHO05D000740 2.5e-07 59.7 135 29.6
CAN.G757.7 Capsicum annuum HOM05D000888 ORTHO05D000740 3.3e-07 59.3 144 31.9
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 3.3e-07 59.3 145 28.3
Nitab4.5_0000025g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.3e-07 59.3 141 29.8
Nitab4.5_0012696g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.3e-07 59.3 102 34.3
Sopen08g002440 Solanum pennellii HOM05D000888 ORTHO05D000740 3.3e-07 59.3 152 25.0
Nitab4.5_0007342g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.3e-07 58.9 104 33.7
Nitab4.5_0008877g0050 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.3e-07 58.9 111 32.4
Aqoxy6G00930 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 5.6e-07 58.5 154 26.0
PSO170G0378 Papaver somniferum HOM05D000823 ORTHO05D000088 5.6e-07 58.5 67 49.3
CAN.G757.9 Capsicum annuum HOM05D000888 ORTHO05D000740 7.3e-07 58.2 129 31.0
CAN.G559.1 Capsicum annuum HOM05D000888 ORTHO05D000740 9.5e-07 57.8 82 40.2
Dinv00373 Davidia involucrata HOM05D000888 ORTHO05D000740 9.5e-07 57.8 99 35.4
Dinv01509 Davidia involucrata HOM05D000888 ORTHO05D000740 9.5e-07 57.8 99 35.4
FvH4_5g30470 Fragaria vesca HOM05D000823 ORTHO05D000088 1.2e-06 57.4 75 36.0
Oeu028453.1 Olea europaea HOM05D000823 ORTHO05D000088 1.2e-06 57.4 89 36.0
Sopen08g002240 Solanum pennellii HOM05D000888 ORTHO05D000740 1.2e-06 57.4 100 39.0
Thecc.01G046600 Theobroma cacao HOM05D000823 ORTHO05D000088 1.2e-06 57.4 173 27.2
MD04G1034600 Malus domestica HOM05D000823 ORTHO05D000088 1.6e-06 57.0 111 35.1
Peaxi162Scf00045g01644 Petunia axillaris HOM05D000180 ORTHO05D000740 1.6e-06 57.0 80 40.0
Nitab4.5_0000555g0110 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.1e-06 56.6 112 34.8
PGR044G2084 Punica granatum HOM05D000823 ORTHO05D000088 2.1e-06 56.6 118 32.2
Sopen08g002180 Solanum pennellii HOM05D000888 ORTHO05D000740 2.1e-06 56.6 149 27.5
HPP92_003368 Vanilla planifolia HOM05D000823 ORTHO05D000088 2.1e-06 56.6 79 43.0
CAN.G950.1 Capsicum annuum HOM05D000888 ORTHO05D000740 2.8e-06 56.2 141 32.6
Nitab4.5_0010282g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.8e-06 56.2 128 28.9
Peaxi162Scf00045g01642 Petunia axillaris HOM05D000888 ORTHO05D000740 2.8e-06 56.2 109 32.1
Prupe.1G388000 Prunus persica HOM05D000823 ORTHO05D000088 2.8e-06 56.2 88 33.0
Prupe.4G178300 Prunus persica HOM05D000823 ORTHO05D000088 2.8e-06 56.2 149 32.2
ATR0626G172 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.6e-06 55.8 56 44.6
Peaxi162Scf00346g00005 Petunia axillaris HOM05D000888 ORTHO05D000740 3.6e-06 55.8 166 28.9
RcHm_v2.0_Chr7g0224941 Rosa chinensis HOM05D000823 ORTHO05D000088 3.6e-06 55.8 79 41.8
CAN.G673.7 Capsicum annuum HOM05D000002 ORTHO05D000740 4.7e-06 55.5 120 29.2
FAN13G1961 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.7e-06 55.5 75 34.7
Nitab4.5_0000555g0080 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.7e-06 55.5 82 39.0
FAN04G2451 Fragaria x ananassa HOM05D000823 ORTHO05D000088 6.2e-06 55.1 75 34.7
Nitab4.5_0012696g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.2e-06 55.1 145 28.3
Potri.014G036900 Populus trichocarpa HOM05D000823 ORTHO05D000088 6.2e-06 55.1 158 32.3
Sopen08g002250 Solanum pennellii HOM05D000888 ORTHO05D000740 6.2e-06 55.1 106 32.1
MD03G1230100 Malus domestica HOM05D000823 ORTHO05D000088 8.1e-06 54.7 124 30.6
Peaxi162Scf00045g01527 Petunia axillaris HOM05D000888 ORTHO05D000740 8.1e-06 54.7 104 31.7
Peaxi162Scf00045g01638 Petunia axillaris HOM05D000888 ORTHO05D000740 8.1e-06 54.7 117 29.1
PGR083G2640 Punica granatum HOM05D000823 ORTHO05D000088 8.1e-06 54.7 93 35.5
Sopen08g002220 Solanum pennellii HOM05D000888 ORTHO05D000740 8.1e-06 54.7 147 29.3


User provided reference genes

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