Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 2022.3 1029 100.0
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1638.6 1029 82.2
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1620.1 1052 80.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1613.6 1034 80.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1590.5 1035 80.2
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1529.6 1040 76.3
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1511.9 1048 76.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1508.4 1027 75.8
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1505.7 1017 76.4
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1505.3 1038 76.3
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1489.2 1006 76.3
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1485.7 1035 74.8
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1038 74.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1477.2 1021 75.0
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1026 74.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1475.7 1038 74.5
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1469.1 1033 73.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1467.2 1017 73.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1458.7 1018 73.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1456.8 1028 73.6
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1456.0 1034 74.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1453.0 1031 73.0
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1451.8 1018 73.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1450.3 1024 72.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1449.9 1041 73.1
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1441.8 1036 73.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1440.2 1002 73.9
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1008 72.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1032 71.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1427.2 1085 70.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1426.4 1039 72.2
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 1046 71.5
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1422.5 1029 72.2
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1035 72.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1421.4 1062 70.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1003 73.5
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1025 72.1
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 1026 71.4
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1060 69.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1002 74.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1042 71.7
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 1035 72.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1001 73.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1030 71.4
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1407.5 1002 73.4
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1023 71.1
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1399.4 1022 70.9
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1042 70.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1039 70.2
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1027 72.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 977 74.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 1023 70.9
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1032 71.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1032 71.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1074 69.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1006 72.2
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1001 71.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1029 71.5
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1018 71.0
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1386.7 1007 72.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1383.2 1036 70.4
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1382.9 996 71.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1382.5 1037 71.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 1037 70.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1380.5 1017 71.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1036 70.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1379.8 1010 72.2
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1379.8 1016 71.2
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1046 74.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1043 70.1
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1064 70.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 1030 70.1
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1011 71.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1027 69.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1003 70.7
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 998 71.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1011 70.6
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 938 74.3
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1001 71.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1350.5 1030 69.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 1032 68.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1077 66.1
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1019 67.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1038 68.2
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1010 69.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 994 69.9
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1317.0 993 69.7
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1312.7 1020 68.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1308.1 984 70.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1307.0 1013 68.8
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1306.6 1021 67.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1011 68.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1012 68.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1012 68.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1020 67.2
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1015 68.1
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1013 68.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1046 66.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1300.4 1018 67.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1299.3 1020 67.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1034 66.1
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1298.5 1030 67.2
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1297.7 1020 67.1
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1297.3 1012 68.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1276.9 887 74.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1274.2 888 74.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 1028 65.7
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 1006 67.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1268.4 1021 65.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1050 64.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1262.3 1039 65.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1259.6 1036 65.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1257.3 915 72.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1250.0 1027 65.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 1016 65.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 989 66.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 1007 65.5
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1233.0 1052 63.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 1014 66.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1216.4 1029 64.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1195.3 1007 62.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1163.3 1036 61.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 1013 62.9
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1149.4 928 65.6
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1140.9 1060 59.8
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1135.6 994 62.1
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1123.6 1029 60.6
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1120.1 1017 59.9
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1100.5 849 67.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.6e-301 1038.9 992 58.1
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.0e-289 998.4 916 59.1
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.0e-270 934.5 803 64.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.1e-267 927.2 853 60.4
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.1e-261 906.4 993 52.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 3.1e-257 892.5 716 68.0
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.5e-251 873.6 739 67.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.4e-249 867.1 1012 50.2
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.8e-247 859.0 971 49.2
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-244 850.1 1009 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-232 810.8 1013 46.7
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.7e-221 773.1 829 50.5
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 5.3e-217 758.8 815 51.4
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 8.8e-204 714.9 657 60.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.1e-198 698.0 913 45.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.3e-186 657.9 823 49.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.4e-185 654.4 717 56.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.3e-166 590.1 632 53.8
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.3e-162 575.5 978 39.3
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 5.6e-150 536.2 670 49.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.3e-143 514.2 618 48.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 4.7e-141 506.5 1135 34.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.0e-136 489.6 590 49.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.2e-133 481.9 382 64.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.0e-123 448.0 548 49.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.4e-121 441.8 639 44.9
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-108 399.1 248 81.5
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.6e-107 394.4 236 85.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.4e-84 318.9 253 67.2
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.2e-81 307.4 310 55.5
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.7e-67 261.5 1047 28.0
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 8.3e-61 240.0 253 54.9
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-58 231.9 222 54.5
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.2e-52 209.9 223 50.2
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.9e-50 204.9 1076 25.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.2e-48 199.5 155 67.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.0e-47 194.5 920 24.6
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 5.7e-46 190.7 150 67.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-43 183.0 136 64.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.8e-38 164.1 152 53.9
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.3e-33 147.9 128 60.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 6.2e-32 144.1 237 43.0
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.2e-28 130.2 119 55.5
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.6e-27 129.4 96 63.5
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.3e-26 125.6 112 58.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 3.1e-15 88.6 60 78.3
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.3e-13 83.2 63 71.4
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 5.4e-12 77.8 66 57.6
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 1.8e-07 62.8 47 72.3
TPR.G37560 Trifolium pratense HOM05D010661 ORTHO05D011785 2.4e-07 62.4 85 47.1
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 3.1e-07 62.0 46 73.9


User provided reference genes

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