Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1686.0 929 100.0
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1585.1 918 94.6
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 0.0e+00 1235.3 940 72.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 0.0e+00 1152.9 940 69.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 0.0e+00 1149.4 936 70.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 0.0e+00 1119.0 887 71.8
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 0.0e+00 1101.7 930 65.7
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.5e-308 1062.8 931 64.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.5e-308 1061.2 938 65.5
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.9e-308 1060.8 942 65.5
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.2e-305 1053.1 958 64.0
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.1e-305 1050.8 877 69.3
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 8.8e-304 1047.0 884 65.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 3.3e-295 1018.5 938 63.4
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.5e-292 1008.4 924 61.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.2e-290 1001.5 923 62.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 7.2e-290 1000.7 937 61.6
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.6e-289 999.6 941 61.7
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 8.0e-289 997.3 888 67.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.6e-287 992.3 884 64.1
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 9.8e-287 990.3 924 62.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.4e-285 986.5 884 64.5
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 9.1e-285 983.8 940 63.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.1e-282 976.9 919 61.9
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 7.2e-282 974.2 936 61.5
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.1e-281 972.6 935 61.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.1e-281 972.6 929 61.0
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.3e-280 969.1 885 63.8
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.3e-280 969.1 945 58.0
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 5.2e-280 968.0 943 60.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 8.8e-280 967.2 894 62.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 4.4e-279 964.9 924 61.0
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 2.4e-277 959.1 937 60.3
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 4.1e-277 958.4 896 61.7
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 5.9e-276 954.5 807 68.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.5e-274 949.1 936 59.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 5.6e-274 948.0 938 59.3
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 6.1e-273 944.5 944 59.4
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 5.2e-272 941.4 936 58.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.4e-271 938.7 882 61.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 9.8e-271 937.2 918 59.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.2e-270 936.0 936 59.3
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.9e-270 935.6 823 62.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 6.4e-270 934.5 932 59.5
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-269 933.7 927 59.2
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.4e-269 933.3 861 62.3
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.4e-269 932.6 936 59.3
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.9e-267 925.2 932 60.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.3e-266 922.2 928 57.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 4.3e-266 921.8 927 57.6
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.6e-265 918.7 939 58.6
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.3e-264 916.0 956 57.4
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 5.8e-263 911.4 964 55.3
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.3e-262 910.2 933 58.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-260 902.9 893 59.2
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.7e-259 899.8 928 57.9
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.0e-259 899.0 925 57.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 6.2e-257 891.3 940 57.2
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 4.0e-256 888.6 893 58.7
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.8e-256 887.9 942 56.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.5e-255 886.7 941 57.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.3e-254 883.6 746 66.2
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-254 882.1 939 55.9
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.9e-253 879.8 880 58.2
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 9.2e-253 877.5 860 60.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 3.0e-251 872.5 936 56.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 5.1e-251 871.7 890 57.2
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 6.6e-251 871.3 927 56.2
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 6.6e-251 871.3 855 61.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.1e-250 870.5 925 56.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.3e-250 868.6 936 56.0
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 2.3e-248 862.8 933 55.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.0e-247 859.8 934 54.8
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.2e-245 852.4 883 57.2
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.1e-244 849.7 946 53.1
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.6e-244 848.6 889 57.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.2e-240 835.1 862 56.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 6.8e-240 834.7 835 57.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.2e-237 825.5 939 52.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.2e-236 823.9 937 53.1
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.7e-236 822.8 832 58.9
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-235 820.8 937 52.8
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.3e-235 819.7 923 54.6
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.1e-234 817.4 859 55.5
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.4e-232 809.7 887 53.8
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.0e-232 808.9 940 52.4
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 9.9e-231 804.3 932 52.0
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 9.3e-229 797.7 580 76.9
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.1e-226 790.8 873 53.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 4.8e-225 785.4 896 53.1
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-224 784.3 888 53.6
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.4e-224 783.1 932 51.6
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.7e-222 776.9 889 52.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.2e-221 772.3 890 52.2
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.3e-219 766.5 888 52.3
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 9.6e-218 761.1 885 53.3
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 9.6e-218 761.1 885 51.5
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.3e-217 760.8 888 51.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-212 744.2 891 51.5
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.5e-210 737.3 887 51.4
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-205 721.1 633 62.7
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 9.3e-205 718.0 918 49.6
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-204 716.8 901 49.7
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-203 714.5 892 49.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-203 714.5 922 48.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-203 713.8 891 50.1
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 6.3e-201 705.3 772 55.2
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 5.0e-198 695.7 888 48.3
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.7e-193 680.6 868 47.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.8e-193 679.1 911 47.6
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.2e-190 670.2 898 47.4
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 4.7e-188 662.5 675 58.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.8e-185 652.5 858 49.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.3e-182 644.4 871 47.6
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 4.0e-179 632.9 623 60.2
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.5e-167 593.2 1054 39.8
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-165 587.0 886 45.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.1e-160 570.1 894 44.9
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.5e-143 513.5 408 71.1
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-139 501.1 831 42.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 6.0e-127 459.5 471 57.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 5.1e-126 456.4 914 39.1
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 6.9e-123 446.0 797 41.0
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 4.4e-122 443.4 1041 33.6
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 7.6e-122 442.6 467 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.1e-107 394.0 925 36.2
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-104 384.8 880 35.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 4.8e-100 370.2 988 34.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.8e-100 370.2 286 68.2
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.2e-100 369.8 248 76.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 4.5e-98 363.6 346 58.4
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.2e-95 355.5 357 56.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.6e-87 327.0 899 32.5
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.6e-87 327.0 899 32.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.3e-84 318.9 238 69.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 2.2e-84 318.2 985 31.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 6.9e-75 286.6 472 43.6
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.9e-73 281.2 199 71.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.2e-72 277.3 335 50.4
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.0e-65 256.1 752 32.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.6e-63 248.8 421 43.2
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-62 245.4 421 43.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-61 240.4 438 42.7
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 8.2e-60 236.5 428 43.2
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.0e-58 231.9 856 28.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.9e-58 230.3 382 44.2
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-53 215.7 418 40.2
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.2e-50 206.1 332 43.4
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-48 199.5 151 67.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.2e-48 197.6 380 37.9
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.0e-45 188.7 179 65.4
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.6e-45 188.3 320 43.4
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.6e-45 188.3 174 60.3
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.5e-45 186.8 500 32.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.2e-42 179.5 304 43.4
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.6e-41 173.7 220 45.9
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-40 171.8 736 28.1
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 2.9e-36 158.3 131 61.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-35 155.6 206 48.5
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.5e-34 151.4 249 40.2
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-33 149.1 325 37.5
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.0e-33 148.3 324 37.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-33 147.5 169 53.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.6e-31 142.5 972 24.8
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.4e-30 139.4 158 44.9
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.4e-29 134.4 139 56.8
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-27 129.8 319 36.4
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-26 126.3 319 35.7
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-25 122.5 124 61.3
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 5.6e-24 117.5 287 38.0
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.8e-22 112.5 202 37.1
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 7.6e-13 80.5 91 48.4
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 2.2e-12 79.0 90 51.1
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.1e-11 76.6 182 34.6
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-11 76.6 210 32.9
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 3.9e-09 68.2 124 41.1
Actinidia24816 Actinidia chinensis HOM05D056392 ORTHO05D056303 8.7e-09 67.0 128 46.9
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.8e-07 62.0 57 61.4
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.4e-06 59.7 73 49.3


User provided reference genes

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