Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1785.8 928 100.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1764.2 928 99.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1281.2 932 75.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 0.0e+00 1142.9 931 68.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 0.0e+00 1132.5 931 68.4
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 0.0e+00 1112.4 898 68.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1099.3 919 67.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.7e-308 1060.4 940 64.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.1e-289 999.2 1010 57.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 3.3e-287 991.9 926 61.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-284 982.6 783 70.4
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.2e-283 979.2 949 58.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.1e-281 971.1 937 59.1
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.0e-279 966.1 946 59.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.0e-277 957.6 951 59.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.9e-276 954.5 947 57.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.7e-275 953.0 943 58.6
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.5e-275 951.0 941 58.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-272 942.6 930 60.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.4e-271 938.7 947 56.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.7e-270 935.3 947 57.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.7e-270 935.3 948 58.3
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 4.9e-270 934.9 1000 54.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.7e-267 926.4 947 55.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.8e-263 911.4 947 57.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.0e-260 902.9 975 57.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 7.3e-258 894.4 679 73.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-256 890.6 940 54.8
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-256 889.8 940 54.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.6e-255 885.9 944 56.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-255 885.9 939 56.8
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-255 885.6 940 54.5
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.3e-254 883.6 942 55.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.2e-254 882.9 940 54.9
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-253 879.8 938 56.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.1e-252 876.3 940 56.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.1e-252 876.3 985 55.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.3e-250 869.0 934 55.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.5e-250 867.5 937 56.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.6e-249 865.5 938 56.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.2e-249 864.8 947 55.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.4e-248 863.6 970 55.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.5e-247 860.1 960 53.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.7e-243 846.7 945 54.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-243 846.3 892 55.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 5.6e-242 841.6 941 53.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.8e-239 831.6 940 53.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 7.6e-239 831.2 893 55.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.4e-238 828.2 931 52.5
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 5.4e-237 825.1 948 54.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-236 823.9 897 52.5
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-236 822.8 858 53.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 6.0e-236 821.6 913 52.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-235 820.5 897 52.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.3e-235 819.7 939 52.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.6e-235 818.1 949 51.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.7e-235 817.8 947 51.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 9.6e-234 814.3 951 51.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.8e-233 812.8 942 51.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.1e-233 811.2 942 51.7
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.1e-232 810.8 900 53.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 9.0e-232 807.7 929 52.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.5e-231 807.0 853 55.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 7.6e-231 804.7 898 54.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.3e-230 803.9 926 52.5
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-229 800.4 949 51.2
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-228 797.3 853 54.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.3e-227 793.1 922 53.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.6e-226 788.5 909 52.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.1e-224 784.3 921 52.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.4e-224 783.1 1009 49.3
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-224 783.1 916 52.4
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.1e-224 782.7 968 52.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.9e-224 781.6 918 52.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.4e-223 779.2 920 52.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.0e-219 766.1 930 50.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.1e-218 764.2 949 50.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.1e-216 757.7 927 51.3
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.1e-216 756.1 934 50.1
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.3e-216 755.4 1026 46.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-215 753.8 694 63.7
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 9.9e-215 751.1 945 51.1
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.9e-214 749.6 900 51.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.9e-214 748.8 936 50.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.4e-214 748.0 920 51.5
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.6e-212 743.8 922 48.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.3e-211 740.0 941 50.7
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.0e-208 729.2 974 49.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 7.6e-207 724.9 939 49.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-206 723.8 945 49.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.9e-202 710.3 942 48.3
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.3e-202 709.1 1017 45.2
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.8e-200 703.7 974 49.0
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.6e-196 689.5 942 48.2
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 6.7e-195 685.3 929 48.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.7e-195 685.3 869 50.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.2e-193 680.2 973 46.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.8e-193 679.9 917 47.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 6.3e-193 678.7 934 47.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.1e-188 662.1 898 47.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 6.1e-188 662.1 929 47.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.0e-186 657.1 678 55.9
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.4e-184 650.2 908 47.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.3e-182 644.4 622 60.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.7e-177 626.3 897 47.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.4e-176 623.6 890 46.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.5e-173 613.6 961 43.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 9.4e-173 611.7 908 45.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-172 611.3 903 46.7
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.5e-170 604.4 949 42.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.7e-169 599.7 694 51.4
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-168 598.2 940 42.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.1e-168 596.7 869 45.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 6.5e-166 589.0 873 45.1
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.1e-165 588.2 958 42.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-162 578.2 879 44.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.7e-161 573.2 974 40.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.7e-158 564.3 696 53.0
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-158 564.3 927 43.3
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.2e-157 559.7 912 45.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-156 557.8 504 62.1
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-156 557.4 957 41.9
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 4.0e-155 553.1 955 41.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 4.0e-155 553.1 955 41.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.2e-155 552.7 953 42.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.2e-152 543.5 899 43.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 7.0e-152 542.3 954 41.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-151 540.8 954 41.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 7.8e-151 538.9 947 41.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.3e-150 537.3 964 41.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-150 537.0 957 40.6
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 6.6e-150 535.8 937 41.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-149 535.0 947 41.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.9e-147 525.4 938 41.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.4e-144 518.1 808 41.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-137 494.6 466 60.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.6e-135 488.0 956 38.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.6e-132 476.9 635 47.1
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-131 474.6 880 38.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-131 474.2 917 37.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 8.9e-131 472.2 898 39.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.1e-126 456.4 862 41.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.4e-122 443.7 873 40.8
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.4e-121 439.1 333 70.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.1e-108 397.9 538 46.1
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-104 385.2 440 53.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.1e-100 369.4 623 43.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.2e-95 355.5 882 34.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.9e-91 339.7 965 33.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 8.4e-89 332.8 288 62.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.5e-88 330.1 771 35.8
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.3e-85 320.5 828 33.1
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-84 318.9 457 46.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-75 288.9 383 46.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.6e-74 284.6 816 32.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-68 265.4 349 46.7
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-63 248.8 424 41.0
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.7e-63 248.1 225 60.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.7e-60 238.8 284 50.4
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.8e-60 238.0 957 28.3
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 6.3e-60 236.9 821 30.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.6e-47 194.5 495 31.1
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.4e-46 192.6 282 48.6
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.6e-45 188.3 548 31.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-44 185.7 266 46.2
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 9.1e-43 179.9 111 74.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.0e-38 166.4 187 49.2
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-35 154.5 265 40.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.1e-32 146.4 109 65.1
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.3e-32 144.8 117 66.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.9e-28 131.7 148 50.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 5.6e-24 117.5 122 53.3
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.6e-23 114.8 118 55.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 3.4e-21 108.2 90 72.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.7e-17 95.9 134 40.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.6e-13 82.0 144 41.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 4.9e-12 77.8 125 41.6
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-11 76.6 44 72.7
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.2e-11 73.6 148 37.8
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.6e-10 72.8 87 47.1
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.1e-09 67.8 123 32.5
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-08 65.9 106 41.5
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 5.2e-06 57.8 149 28.9
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 5.2e-06 57.8 149 28.9


User provided reference genes

Program Settings