Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 1.5e-149 533.1 334 100.0
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 6.5e-132 474.6 257 89.9
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.6e-127 459.9 252 90.9
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 4.1e-126 455.3 257 87.5
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 6.9e-126 454.5 255 88.2
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 1.8e-121 439.9 261 83.5
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 3.9e-121 438.7 282 78.4
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 4.3e-120 435.3 254 85.0
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 6.3e-119 431.4 254 83.5
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 6.9e-118 427.9 254 84.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.4e-117 425.6 255 82.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.4e-117 425.6 254 83.1
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 4.5e-117 425.2 258 81.0
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 5.9e-117 424.9 253 83.0
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.3e-116 423.7 256 83.2
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 2.2e-116 422.9 254 83.1
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 2.9e-116 422.5 254 81.1
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 6.5e-116 421.4 255 81.6
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.4e-115 420.2 253 81.8
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.9e-115 419.9 254 82.3
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 4.2e-115 418.7 254 81.9
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 4.2e-115 418.7 254 81.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 2.1e-114 416.4 254 79.9
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.7e-114 416.0 258 80.2
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.7e-114 415.2 260 80.0
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.7e-114 415.2 260 80.0
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 6.1e-114 414.8 257 81.3
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 7.9e-114 414.5 256 80.9
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.0e-113 414.1 253 81.4
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.4e-113 413.7 256 80.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.3e-113 412.9 260 79.6
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 6.7e-113 411.4 262 79.0
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 6.7e-113 411.4 263 79.8
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 6.7e-113 411.4 263 79.8
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.1e-112 410.6 254 81.9
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.5e-112 410.2 267 77.9
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.0e-112 409.8 263 79.5
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.0e-112 409.8 263 79.5
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 2.0e-112 409.8 255 79.2
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.6e-112 409.5 259 80.7
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.6e-112 409.5 264 79.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 7.4e-112 407.9 259 79.2
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.8e-111 405.2 256 80.1
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 6.3e-111 404.8 210 90.5
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 8.2e-111 404.4 260 78.1
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 8.2e-111 404.4 256 79.3
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 8.2e-111 404.4 261 77.8
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 2.4e-110 402.9 272 75.0
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.1e-110 402.5 252 80.2
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 4.1e-110 402.1 259 78.4
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 2.0e-109 399.8 286 72.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 2.0e-109 399.8 251 79.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 2.6e-109 399.4 255 76.1
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.6e-109 399.4 258 77.9
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 5.9e-109 398.3 255 77.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 5.9e-109 398.3 258 78.3
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.7e-108 396.7 257 76.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 2.5e-107 392.9 262 76.0
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 4.2e-107 392.1 259 77.6
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 5.5e-107 391.7 257 75.5
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.2e-107 391.3 258 76.0
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 9.4e-107 391.0 265 73.2
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.2e-106 390.6 256 76.2
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 2.7e-106 389.4 254 76.0
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.0e-105 386.0 261 74.7
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 6.7e-105 384.8 256 77.7
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.5e-104 383.6 256 74.2
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.6e-104 382.9 256 76.6
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 3.3e-104 382.5 255 77.3
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.3e-104 382.5 256 75.8
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 3.3e-104 382.5 262 73.7
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 7.5e-104 381.3 256 73.8
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.1e-102 377.5 256 74.6
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 1.1e-102 377.5 285 68.8
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.4e-102 377.1 248 75.8
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.8e-102 376.7 256 75.0
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 4.1e-102 375.6 241 78.0
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 3.5e-101 372.5 262 71.0
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.9e-101 371.7 254 73.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 3.8e-100 369.0 263 71.9
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.0e-100 368.6 265 71.7
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 8.5e-100 367.9 262 71.8
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.1e-99 367.5 262 71.4
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.5e-99 366.3 262 69.8
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 7.2e-99 364.8 262 71.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 9.4e-99 364.4 266 68.0
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 9.4e-99 364.4 266 68.0
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.6e-98 363.6 265 69.4
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.6e-98 363.6 265 69.4
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 2.1e-98 363.2 265 69.4
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 2.1e-98 363.2 265 70.6
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 4.7e-98 362.1 266 67.7
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 4.7e-98 362.1 266 67.7
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 4.7e-98 362.1 264 69.3
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 8.0e-98 361.3 253 71.1
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 8.8e-97 357.8 264 68.9
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.7e-95 353.6 276 67.0
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 2.2e-95 353.2 255 69.4
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 3.7e-95 352.4 299 62.5
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 4.8e-95 352.1 261 67.8
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 7.0e-94 348.2 212 78.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 7.0e-94 348.2 199 81.4
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 9.1e-94 347.8 206 78.6
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.2e-93 347.4 261 68.6
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.0e-92 344.4 210 84.3
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 8.0e-90 334.7 250 64.8
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.5e-83 311.2 238 68.5
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.3e-79 300.8 189 78.3
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.8e-78 297.0 236 66.5
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.3e-76 290.8 247 64.0
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.1e-75 287.7 174 79.3
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.8e-74 283.1 175 79.4
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 2.8e-74 283.1 194 71.6
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.2e-72 277.7 222 62.6
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 1.7e-71 273.9 254 56.7
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 2.2e-71 273.5 175 76.6
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 2.2e-71 273.5 174 75.3
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.8e-65 253.8 175 73.1
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.2e-61 241.1 197 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 6.0e-61 238.8 208 57.7
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 7.8e-61 238.4 269 48.7
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 6.2e-58 228.8 254 53.9
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.4e-49 200.3 170 57.1
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.1e-46 191.4 206 47.1
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.4e-40 169.9 176 53.4
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 1.9e-35 154.1 277 35.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.9e-31 140.2 84 85.7
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 9.6e-27 125.2 80 80.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 1.8e-25 120.9 171 39.8
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 4.5e-24 116.3 275 31.6
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 8.4e-23 112.1 57 94.7
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.4e-23 112.1 54 96.3
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 2.1e-18 97.4 52 86.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 5.3e-09 66.2 149 32.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.7e-07 61.2 189 27.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.8e-07 60.1 182 27.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 3.8e-07 60.1 179 25.7
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 6.5e-07 59.3 184 28.8
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.1e-06 58.5 183 27.3
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.4e-06 58.2 177 28.8
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 1.9e-06 57.8 56 62.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.5e-06 57.4 177 28.8
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.5e-06 57.4 189 27.0
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.2e-06 57.0 171 26.9
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 4.2e-06 56.6 183 27.3
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 4.2e-06 56.6 171 26.9
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 5.5e-06 56.2 186 26.9
Glyma.07G142100 Glycine max HOM05D005750 ORTHO05D007126 5.5e-06 56.2 41 68.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 5.5e-06 56.2 174 28.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 7.2e-06 55.8 157 27.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 9.4e-06 55.5 185 27.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 9.4e-06 55.5 185 27.0
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 9.4e-06 55.5 193 26.4


User provided reference genes

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