Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 0.0e+00 1280.8 653 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 0.0e+00 1103.2 659 84.7
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.0e-306 1056.2 662 80.7
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 3.2e-300 1034.6 636 81.4
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.1e-299 1031.9 636 81.1
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.1e-297 1026.2 622 81.5
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.1e-295 1019.6 663 77.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.1e-295 1018.1 633 79.9
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 8.9e-295 1016.5 646 79.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 3.4e-294 1014.6 545 89.4
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 4.4e-294 1014.2 657 77.8
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 3.8e-293 1011.1 850 63.9
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 543 89.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.9e-292 1008.8 756 70.1
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.2e-292 1008.1 545 88.1
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 3.2e-292 1008.1 645 78.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 4.1e-292 1007.7 543 88.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 9.2e-292 1006.5 543 88.2
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 2.7e-291 1005.0 543 87.7
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.6e-291 1004.2 632 79.1
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.3e-290 1002.7 632 79.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.7e-290 1002.3 545 88.6
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.7e-290 1002.3 632 79.0
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 8.7e-290 1000.0 649 77.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.1e-289 999.6 543 87.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.5e-289 999.2 591 83.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.5e-289 998.4 670 76.1
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.5e-289 998.4 575 83.7
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 4.3e-289 997.7 545 88.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 9.6e-289 996.5 681 74.7
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.2e-288 996.1 652 77.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.1e-288 995.3 580 82.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 2.1e-288 995.3 650 77.4
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.7e-288 994.2 635 78.1
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.2e-288 993.8 545 87.3
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.1e-287 993.0 545 86.8
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.8e-287 992.3 581 83.1
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.8e-287 992.3 575 83.5
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.0e-287 991.1 659 76.0
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.0e-287 991.1 649 78.0
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 6.9e-287 990.3 652 75.9
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 6.9e-287 990.3 649 77.2
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 9.0e-287 989.9 635 77.8
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.9e-285 984.2 545 85.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 4.9e-285 984.2 554 86.1
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.4e-284 982.6 658 75.5
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.4e-284 982.6 545 85.5
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.4e-284 981.9 544 86.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.4e-284 981.9 646 77.7
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.2e-284 981.1 602 79.2
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.6e-283 979.2 545 85.5
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.6e-283 979.2 646 77.2
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.6e-283 979.2 655 75.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.1e-283 978.8 678 73.3
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.7e-283 978.4 545 86.2
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.6e-283 977.6 646 77.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 7.8e-283 976.9 545 86.1
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.0e-282 976.5 545 87.0
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.3e-282 976.1 579 81.3
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.7e-282 975.7 545 84.6
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.0e-282 974.9 545 86.2
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.0e-282 974.9 545 86.1
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.0e-282 974.9 626 78.4
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 3.9e-282 974.5 689 72.4
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 5.1e-282 974.2 579 81.5
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.6e-282 973.8 576 80.6
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.9e-281 972.2 627 75.6
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.3e-281 971.1 625 77.9
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 5.6e-281 970.7 544 85.3
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 7.3e-281 970.3 647 75.3
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 9.6e-281 969.9 588 80.6
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.6e-280 969.1 590 79.5
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.6e-280 969.1 655 74.4
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.1e-280 968.8 584 81.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 2.8e-280 968.4 543 84.3
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 6.2e-280 967.2 543 84.0
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.4e-279 965.3 543 84.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.1e-279 964.9 639 74.6
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 6.9e-279 963.8 654 73.9
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 6.9e-279 963.8 590 79.2
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 6.9e-279 963.8 543 84.2
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 2.6e-278 961.8 608 77.1
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 4.5e-278 961.1 643 73.7
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 7.6e-278 960.3 630 77.9
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 2.2e-277 958.7 640 74.1
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.2e-277 958.7 536 84.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.8e-277 958.0 536 84.5
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.1e-276 956.4 638 74.6
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.4e-276 955.3 544 83.5
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.2e-276 954.9 545 82.9
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 4.2e-276 954.5 544 83.5
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 4.2e-276 954.5 581 79.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.1e-275 952.2 543 82.9
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 3.0e-274 948.3 631 74.5
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.5e-273 946.0 632 74.7
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 4.3e-273 944.5 622 74.8
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.6e-272 942.6 631 74.3
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.2e-272 940.6 545 81.7
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 6.9e-271 937.2 545 81.5
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.6e-270 935.3 545 81.5
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 6.4e-269 930.6 629 73.8
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.4e-268 929.5 649 71.6
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 3.2e-268 928.3 613 75.7
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 4.6e-267 924.5 545 82.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.3e-266 922.9 615 74.6
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.9e-265 919.1 612 76.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.3e-265 917.9 644 73.3
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.1e-264 915.6 532 80.8
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 2.7e-259 898.7 630 71.0
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.9e-257 892.5 538 79.7
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 5.3e-255 884.4 614 72.5
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.5e-253 877.5 546 76.9
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.1e-250 867.8 460 89.3
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.7e-248 861.7 545 77.8
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-239 832.8 447 90.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.3e-237 826.6 501 80.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 5.5e-236 821.2 447 88.4
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.6e-233 812.4 560 73.6
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.1e-231 807.0 547 69.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.7e-229 799.7 546 70.5
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-229 799.3 438 87.9
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 8.0e-227 790.8 547 68.2
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 8.3e-208 727.6 517 69.6
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.6e-205 718.0 564 67.2
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.0e-194 682.2 452 73.5
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.5e-182 642.5 538 59.3
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.0e-177 626.7 361 82.5
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.6e-171 605.9 344 84.6
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.6e-164 582.0 545 58.3
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.3e-160 570.9 278 100.0
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 3.8e-152 542.7 302 85.8
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.1e-148 531.2 417 66.7
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 5.6e-148 528.9 546 55.3
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.4e-143 514.2 560 48.9
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 8.7e-141 505.0 280 85.7
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 4.3e-132 476.1 261 86.6
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.2e-117 426.0 576 43.9
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 5.7e-108 396.0 287 65.5
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 8.3e-99 365.5 643 36.7
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 4.9e-91 339.7 184 87.0
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 5.4e-90 336.3 263 68.1
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-83 314.7 179 86.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.2e-83 314.3 179 86.0
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 4.9e-83 313.2 167 90.4
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.7e-81 307.4 188 75.5
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.0e-80 305.4 592 35.6
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 7.5e-76 289.3 531 35.0
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.7e-75 287.0 583 33.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.2e-70 269.6 321 49.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 2.6e-68 264.2 609 33.5
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.2e-66 257.3 140 88.6
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 8.1e-62 242.7 197 62.4
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.4e-60 236.9 599 31.1
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.9e-52 209.1 117 85.5
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.6e-49 201.8 120 83.3
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.1e-45 187.6 107 84.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 4.9e-43 180.3 98 86.7
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 6.7e-40 169.9 155 57.4
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-36 158.3 120 64.2
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-30 139.0 77 79.2
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 6.9e-29 133.3 65 93.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.6e-28 131.3 107 62.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 3.4e-28 131.0 137 51.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 2.2e-27 128.3 67 88.1
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 6.1e-25 120.2 64 84.4
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.4e-21 108.2 64 81.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-11 74.7 54 70.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 3.8e-11 74.3 120 41.7
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 7.9e-09 66.6 38 73.7
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.9e-08 64.3 58 55.2
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.4e-07 60.8 68 50.0


User provided reference genes

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