Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 4.6e-208 727.6 366 100.0
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 3.7e-149 531.9 360 73.3
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.4e-143 513.5 358 72.9
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 2.8e-136 489.2 364 69.0
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 4.6e-131 471.9 361 67.6
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 7.3e-129 464.5 359 64.9
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.2e-126 457.2 295 74.6
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.1e-123 446.4 359 62.4
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 7.9e-123 444.5 356 62.1
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.3e-122 443.7 356 63.8
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.3e-122 443.7 295 71.5
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 1.3e-122 443.7 359 61.8
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 1.7e-122 443.4 295 72.2
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 2.3e-122 443.0 362 64.1
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 3.9e-122 442.2 356 62.1
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.3e-120 437.2 338 65.7
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 2.8e-120 436.0 294 70.7
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.4e-119 433.7 359 59.1
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 3.1e-119 432.6 289 71.3
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 1.5e-118 430.3 295 70.2
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 7.6e-118 427.9 291 71.5
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.8e-117 425.6 358 60.9
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 6.4e-117 424.9 430 55.1
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 1.9e-116 423.3 359 57.9
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 1.6e-115 420.2 379 59.4
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 2.1e-115 419.9 289 71.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 3.5e-115 419.1 363 59.8
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 7.9e-115 417.9 284 71.8
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.3e-114 417.2 360 59.2
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.3e-114 416.4 284 70.4
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.0e-114 416.0 285 70.2
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 3.9e-114 415.6 292 71.2
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 3.9e-114 415.6 288 69.8
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 6.7e-114 414.8 291 69.1
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 6.7e-114 414.8 284 71.5
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 1.5e-113 413.7 284 70.1
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.9e-113 413.3 360 59.2
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 1.9e-113 413.3 360 59.2
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.9e-113 413.3 291 69.8
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 3.3e-113 412.5 390 58.7
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 3.3e-113 412.5 291 69.1
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 4.3e-113 412.1 292 70.2
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.3e-112 410.6 284 70.4
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.3e-112 410.6 284 69.7
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 2.8e-112 409.5 288 71.2
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.8e-112 408.7 284 68.3
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 1.8e-111 406.8 284 69.7
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 1.8e-111 406.8 294 69.0
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 1.2e-110 404.1 289 68.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.5e-110 403.7 284 69.0
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 2.0e-110 403.3 284 68.3
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 4.5e-110 402.1 359 59.3
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.0e-109 401.0 288 69.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.0e-109 401.0 284 68.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.7e-109 400.2 356 60.7
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 2.2e-109 399.8 327 62.1
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 2.9e-109 399.4 287 67.6
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 2.9e-109 399.4 284 69.0
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 6.5e-109 398.3 287 67.6
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 8.4e-109 397.9 287 67.6
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.4e-108 397.1 288 68.8
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 9.3e-108 394.4 289 64.4
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 1.6e-107 393.7 288 67.7
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 1.6e-107 393.7 288 67.7
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 7.9e-107 391.3 285 68.1
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.0e-106 391.0 288 67.4
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 3.0e-106 389.4 289 67.8
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 8.7e-106 387.9 289 64.0
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 2.1e-104 383.3 284 66.9
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 4.8e-104 382.1 285 66.3
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 8.2e-104 381.3 291 66.3
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.4e-103 380.6 289 63.0
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.4e-103 379.8 284 67.6
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 7.6e-102 374.8 287 62.4
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.2e-101 373.2 297 62.0
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 2.2e-101 373.2 291 64.9
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 8.5e-101 371.3 313 58.8
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.5e-100 369.8 250 68.8
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.3e-98 363.2 247 70.9
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 7.4e-97 358.2 289 59.5
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 4.1e-95 352.4 284 63.7
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.2e-94 350.9 309 57.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.5e-92 343.2 292 60.6
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 4.2e-92 342.4 273 61.5
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 2.7e-91 339.7 368 53.8
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 6.3e-88 328.6 288 56.9
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 1.1e-87 327.8 270 58.1
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.0e-85 318.9 230 67.4
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 3.2e-84 316.2 285 58.6
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 9.4e-84 314.7 202 71.3
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.7e-83 313.2 271 60.1
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 4.7e-83 312.4 289 56.7
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 6.7e-74 282.0 261 56.3
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 9.4e-68 261.5 293 46.4
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.8e-66 257.3 298 45.6
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 3.8e-61 239.6 321 44.2
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 1.1e-55 221.5 153 66.0
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 3.1e-55 219.9 288 42.0
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.5e-54 216.5 146 68.5
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.0e-53 214.9 155 65.2
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.0e-50 204.9 218 47.7
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 1.7e-48 197.6 136 66.9
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.2e-43 181.4 285 39.3
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 2.3e-42 177.2 366 33.9
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 4.6e-38 162.9 305 36.4
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 2.4e-31 140.6 167 44.9
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 6.0e-30 136.0 146 46.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 6.0e-22 109.4 99 52.5
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.3e-21 108.2 86 59.3
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 5.1e-21 106.3 61 85.2
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 5.1e-21 106.3 61 85.2
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 5.1e-21 106.3 81 61.7
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.1e-12 78.6 167 32.3
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.4e-07 61.6 163 31.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 2.4e-07 60.8 166 29.5
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 3.2e-07 60.5 58 46.6
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 5.4e-07 59.7 149 29.5
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 58.5 167 29.3
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 58.5 167 29.3
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.7e-06 57.4 185 29.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.7e-06 57.4 167 28.7
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 3.5e-06 57.0 172 29.1
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 4.6e-06 56.6 170 30.6
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 6.0e-06 56.2 152 29.6


User provided reference genes

Program Settings