Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.5e-30 133.7 68 100.0
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-21 105.9 61 90.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.0e-20 100.9 61 83.6
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.0e-20 100.9 61 82.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.8e-20 100.1 61 83.6
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 6.8e-20 100.1 61 85.2
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.5e-19 99.0 61 83.6
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-19 99.0 61 83.6
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-19 99.0 61 83.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.6e-19 98.2 65 75.4
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.6e-19 98.2 61 80.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.4e-19 97.4 61 82.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.5e-19 96.7 61 78.7
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.8e-18 94.0 61 78.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.8e-17 92.0 61 78.7
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.4e-17 91.7 61 75.4
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 4.1e-17 90.9 61 75.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 7.0e-17 90.1 61 70.5
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 9.1e-17 89.7 61 72.1
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.2e-16 89.4 64 68.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.2e-16 89.4 61 73.8
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.0e-16 88.6 61 73.8
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 3.5e-16 87.8 67 65.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.5e-16 87.8 64 65.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.5e-16 87.8 67 65.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.5e-16 87.8 61 72.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.9e-16 87.0 61 68.9
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.3e-15 85.9 61 68.9
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.3e-15 85.9 61 68.9
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.2e-15 85.1 61 70.5
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.9e-15 84.7 61 68.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.8e-15 84.3 61 68.9
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.8e-15 84.3 61 68.9
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 3.8e-15 84.3 61 65.6
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 3.8e-15 84.3 64 64.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 3.8e-15 84.3 61 68.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.8e-15 84.3 64 65.6
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.0e-15 84.0 61 67.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 5.0e-15 84.0 65 63.1
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.5e-15 83.6 61 65.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 6.5e-15 83.6 61 67.2
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 8.5e-15 83.2 61 65.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 8.5e-15 83.2 65 64.6
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-14 82.8 61 67.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-14 82.8 64 64.1
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.5e-14 82.4 61 67.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.5e-14 82.4 61 62.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.5e-14 82.4 64 68.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.9e-14 82.0 61 65.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.9e-14 82.0 61 65.6
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.9e-14 82.0 61 68.9
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.5e-14 81.6 64 64.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.2e-14 81.3 97 50.5
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.2e-14 80.9 61 62.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 4.2e-14 80.9 61 63.9
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.2e-14 80.9 61 67.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.5e-14 80.5 59 67.8
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 5.5e-14 80.5 61 63.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 7.2e-14 80.1 61 63.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 7.2e-14 80.1 61 63.9
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 9.4e-14 79.7 61 65.6
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.2e-13 79.3 64 62.5
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.6e-13 79.0 66 60.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.7e-13 78.2 60 65.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.7e-13 78.2 61 68.9
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.7e-13 78.2 61 65.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.6e-13 77.8 61 63.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.6e-13 77.8 64 62.5
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.6e-13 77.8 59 64.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.7e-13 77.4 59 64.4
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 6.1e-13 77.0 60 66.7
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.1e-13 77.0 60 66.7
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 6.1e-13 77.0 61 62.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 6.1e-13 77.0 61 65.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 8.0e-13 76.6 58 63.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 8.0e-13 76.6 60 66.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 8.0e-13 76.6 60 66.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 8.0e-13 76.6 61 62.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.0e-13 76.6 60 65.0
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-12 76.3 60 63.3
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.4e-12 75.9 62 59.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.4e-12 75.9 64 56.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.4e-12 75.9 59 62.7
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-12 75.9 59 64.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.4e-12 75.9 61 60.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-12 75.5 61 62.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-12 75.5 61 62.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.8e-12 75.5 60 65.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.8e-12 75.5 59 62.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.8e-12 75.5 61 63.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.3e-12 75.1 61 63.9
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.3e-12 75.1 67 53.7
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.0e-12 74.7 56 67.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.0e-12 74.3 66 57.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 5.2e-12 73.9 61 60.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.2e-12 73.9 65 56.9
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.2e-12 73.9 61 57.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.2e-12 73.9 61 57.4
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.8e-12 73.6 66 57.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.8e-12 73.6 66 57.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 6.8e-12 73.6 61 62.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.2e-11 72.8 54 68.5
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.2e-11 72.8 61 59.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.2e-11 72.8 66 56.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-11 72.8 66 56.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.5e-11 72.4 61 59.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.6e-11 71.6 62 58.1
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.6e-11 71.6 62 58.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.4e-11 71.2 65 56.9
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.4e-11 71.2 61 60.7
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 5.7e-11 70.5 61 57.4
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.5e-11 70.1 82 51.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.8e-11 69.7 61 57.4
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 9.8e-11 69.7 61 57.4
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.7e-10 68.9 55 60.0
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.8e-10 67.4 60 56.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.8e-10 67.4 66 53.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 8.3e-10 66.6 64 53.1
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.1e-09 66.2 61 49.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.4e-09 65.9 68 54.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 9.1e-09 63.2 46 67.4
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.6e-08 62.4 85 42.4
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.0e-08 62.0 64 45.3
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.0e-08 62.0 64 45.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.5e-08 61.2 61 45.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.5e-08 60.8 39 79.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.5e-08 60.8 46 65.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.9e-06 55.5 39 69.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 3.3e-06 54.7 74 41.9


User provided reference genes

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