Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039925 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 3.2e-74 281.6 134 100.0
CSS0046510 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 3.2e-74 281.6 134 100.0
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 1.2e-25 120.2 98 60.2
Lj5A230G43 Lonicera japonica HOM05D001292 ORTHO05D001202 1.3e-19 100.1 90 51.1
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 1.3e-19 100.1 86 58.1
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 1.1e-18 97.1 91 48.4
CAN.G523.11 Capsicum annuum HOM05D001292 ORTHO05D001202 1.9e-18 96.3 89 52.8
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.1e-17 92.8 88 47.7
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.1e-17 92.8 88 48.9
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 2.1e-17 92.8 88 48.9
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 3.6e-17 92.0 89 48.3
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 3.6e-17 92.0 85 51.8
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.6e-17 92.0 88 53.4
Sabra07G0094200 Salix brachista HOM05D001292 ORTHO05D001202 3.6e-17 92.0 89 51.7
Sopen01g048280 Solanum pennellii HOM05D001292 ORTHO05D001202 3.6e-17 92.0 89 51.7
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.7e-17 91.7 89 51.7
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 6.2e-17 91.3 98 44.9
Actinidia01160 Actinidia chinensis HOM05D001292 ORTHO05D001202 8.1e-17 90.9 91 53.8
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 8.1e-17 90.9 86 50.0
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 3.1e-16 89.0 88 47.7
Peaxi162Scf00299g00720 Petunia axillaris HOM05D001292 ORTHO05D001202 3.1e-16 89.0 90 48.9
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 5.2e-16 88.2 86 52.3
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 8.9e-16 87.4 89 46.1
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 8.9e-16 87.4 89 46.1
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 8.9e-16 87.4 90 47.8
Sp7g31340 Schrenkiella parvula HOM05D001292 ORTHO05D001202 8.9e-16 87.4 89 47.2
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.5e-15 86.7 85 51.8
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 2.6e-15 85.9 89 47.2
Cc02_g20940 Coffea canephora HOM05D001292 ORTHO05D001202 3.4e-15 85.5 82 47.6
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 3.4e-15 85.5 89 44.9
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.4e-15 85.1 85 50.6
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 4.4e-15 85.1 72 58.3
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 5.8e-15 84.7 85 50.6
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 5.8e-15 84.7 89 44.9
Phvul.006G202100 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 5.8e-15 84.7 90 45.6
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 7.6e-15 84.3 77 50.6
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 7.6e-15 84.3 77 50.6
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 7.6e-15 84.3 77 50.6
THA.LOC104807180 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 9.9e-15 84.0 86 47.7
AL7G17890 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 1.3e-14 83.6 86 47.7
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 2.9e-14 82.4 86 46.5
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 2.9e-14 82.4 125 35.2
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 4.9e-14 81.6 88 45.5
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 4.9e-14 81.6 92 43.5
Cpa.g.sc42.5 Carica papaya HOM05D001292 ORTHO05D001202 6.4e-14 81.3 72 54.2
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 8.4e-14 80.9 85 45.9
Thhalv10024447m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 8.4e-14 80.9 89 43.8
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 1.1e-13 80.5 85 45.9
AT4G33620 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.4e-13 80.1 86 47.7
Glyma.13G256800 Glycine max HOM05D001292 ORTHO05D001202 2.4e-13 79.3 90 43.3
arahy.Tifrunner.gnm1.ann1.31UHS4 Arachis hypogaea HOM05D001292 ORTHO05D001202 4.1e-13 78.6 86 45.3
arahy.Tifrunner.gnm1.ann1.Y95VYD Arachis hypogaea HOM05D001292 ORTHO05D001202 4.1e-13 78.6 86 45.3
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 7.1e-13 77.8 86 44.2
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 7.1e-13 77.8 88 45.5
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.2e-12 77.0 96 40.6
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 1.2e-12 77.0 89 42.7
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 2.1e-12 76.3 87 44.8
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 2.1e-12 76.3 85 41.2
PSO170G5589 Papaver somniferum HOM05D001292 ORTHO05D001202 2.7e-12 75.9 74 48.6
Nitab4.5_0000706g0010 Nicotiana tabacum HOM05D001292 ORTHO05D001202 3.5e-12 75.5 79 48.1
GSVIVG01009172001 Vitis vinifera HOM05D001292 ORTHO05D001202 3.5e-12 75.5 74 45.9
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 4.6e-12 75.1 85 43.5
Aqoxy6G00877 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 6.0e-12 74.7 71 49.3
Cfa013791 Carpinus fangiana HOM05D001292 ORTHO05D001202 6.0e-12 74.7 97 36.1
MD08G1197400 Malus domestica HOM05D001292 ORTHO05D001202 6.0e-12 74.7 87 43.7
PSO210G3238 Papaver somniferum HOM05D001292 ORTHO05D001202 6.0e-12 74.7 71 46.5
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 6.0e-12 74.7 90 40.0
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 7.8e-12 74.3 80 41.2
Lj4A737G51 Lonicera japonica HOM05D001292 ORTHO05D001202 7.8e-12 74.3 97 39.2
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 1.3e-11 73.6 85 43.5
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 1.7e-11 73.2 96 42.7
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 1.7e-11 73.2 85 47.1
Lj4A718G40 Lonicera japonica HOM05D001292 ORTHO05D001202 3.0e-11 72.4 97 38.1
CANSAT25G2063 Cannabis sativa HOM05D001292 ORTHO05D001202 3.9e-11 72.0 95 40.0
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 5.1e-11 71.6 95 40.0
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 5.1e-11 71.6 90 38.9
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 1.1e-10 70.5 103 33.0
MD15G1385000 Malus domestica HOM05D001292 ORTHO05D001202 1.9e-10 69.7 97 39.2
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 2.5e-10 69.3 88 38.6
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 3.3e-10 68.9 90 38.9
DCAR_012858 Daucus carota HOM05D001292 ORTHO05D001202 3.3e-10 68.9 99 37.4
Lsat_1_v5_gn_6_105041 Lactuca sativa HOM05D001292 ORTHO05D001202 3.3e-10 68.9 95 34.7
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 3.3e-10 68.9 97 37.1
Prupe.6G149300 Prunus persica HOM05D001292 ORTHO05D001202 4.3e-10 68.6 88 42.0
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 5.6e-10 68.2 90 37.8
ECA232G4048 Erigeron canadensis HOM05D001292 ORTHO05D001202 7.3e-10 67.8 91 38.5
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 7.3e-10 67.8 90 37.8
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 7.3e-10 67.8 97 40.2
Oeu010529.1 Olea europaea HOM05D001292 ORTHO05D001202 7.3e-10 67.8 89 37.1
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 9.6e-10 67.4 86 37.2
DCAR_021914 Daucus carota HOM05D001292 ORTHO05D001202 9.6e-10 67.4 88 36.4
MELO3C011091.2 Cucumis melo HOM05D001292 ORTHO05D001202 1.2e-09 67.0 96 37.5
CsaV3_2G030290 Cucumis sativus L. HOM05D001292 ORTHO05D001202 1.2e-09 67.0 111 33.3
Migut.B00556 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.2e-09 67.0 91 37.4
Lalb_Chr11g0065021 Lupinus albus HOM05D001292 ORTHO05D001202 1.2e-09 67.0 94 35.1
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 2.1e-09 66.2 86 40.7
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 2.1e-09 66.2 86 39.5
Sed0011755 Sechium edule HOM05D001292 ORTHO05D001202 2.1e-09 66.2 86 39.5
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 2.8e-09 65.9 88 37.5
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 2.8e-09 65.9 84 40.5
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 6.2e-09 64.7 91 38.5
Medtr2g009580 Medicago truncatula HOM05D001292 ORTHO05D001202 8.1e-09 64.3 89 37.1
CiPaw.07G165900 Carya illinoinensis HOM05D001292 ORTHO05D001202 1.1e-08 63.9 86 37.2
Glyma.06G095600 Glycine max HOM05D001292 ORTHO05D001202 1.1e-08 63.9 86 34.9
Sed0022127 Sechium edule HOM05D001292 ORTHO05D001202 1.4e-08 63.5 86 36.0
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.8e-08 63.2 88 36.4
PSO541G4975 Papaver somniferum HOM05D001292 ORTHO05D001202 1.8e-08 63.2 102 36.3
Ca_16000_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 2.4e-08 62.8 89 33.7
PSO675G2554 Papaver somniferum HOM05D001292 ORTHO05D001202 2.4e-08 62.8 102 37.3
Lsat_1_v5_gn_9_75061 Lactuca sativa HOM05D001292 ORTHO05D001202 3.1e-08 62.4 90 34.4
Cc00_g07670 Coffea canephora HOM05D001292 ORTHO05D001202 5.2e-08 61.6 96 34.4
Lalb_Chr08g0242481 Lupinus albus HOM05D001292 ORTHO05D001202 5.2e-08 61.6 94 31.9
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 5.2e-08 61.6 89 33.7
vmacro04654 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 8.9e-08 60.8 84 35.7
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 1.5e-07 60.1 89 32.6
TAR381G0500 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.6e-07 59.3 49 57.1
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 3.4e-07 58.9 89 32.6
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 4.4e-07 58.5 86 38.4
Psat5g046880 Pisum sativum HOM05D001292 ORTHO05D001202 4.4e-07 58.5 99 33.3
Gorai.009G229600 Gossypium raimondii HOM05D001292 ORTHO05D001202 9.9e-07 57.4 90 33.3
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 9.9e-07 57.4 81 35.8
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 1.3e-06 57.0 90 34.4
Nitab4.5_0001026g0040 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.3e-06 57.0 61 47.5
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.7e-06 56.6 88 34.1
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 3.8e-06 55.5 82 32.9
Carub.0001s0907 Capsella rubella HOM05D001292 ORTHO05D001202 3.8e-06 55.5 82 34.1
Phvul.009G037600 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 3.8e-06 55.5 89 31.5
THA.LOC104816798 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 3.8e-06 55.5 83 31.3
Peaxi162Scf00495g00217 Petunia axillaris HOM05D026203 ORTHO05D030438 4.9e-06 55.1 87 29.9
SGA_v2.0_scaffold83G26374 Striga asiatica HOM05D001292 ORTHO05D001202 6.4e-06 54.7 89 37.1
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 8.4e-06 54.3 75 34.7


User provided reference genes

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