Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046492 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 5.7e-86 320.9 158 100.0
CSS0007807 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 4.8e-85 317.8 158 99.4
Cfa000759 Carpinus fangiana HOM05D001299 ORTHO05D009516 1.1e-54 216.9 204 56.4
TAR626G1915 Trochodendron aralioides HOM05D001299 ORTHO05D009516 2.6e-54 215.7 211 55.9
Actinidia32353 Actinidia chinensis HOM05D001299 ORTHO05D009516 7.5e-54 214.2 201 58.2
Haze_05959 Corylus avellana HOM05D001299 ORTHO05D009516 2.8e-53 212.2 212 53.3
Sed0008848 Sechium edule HOM05D001299 ORTHO05D009516 7.0e-52 207.6 211 54.5
GSVIVG01037941001 Vitis vinifera HOM05D001299 ORTHO05D009516 2.0e-51 206.1 207 54.6
Potri.011G155500 Populus trichocarpa HOM05D001299 ORTHO05D009516 2.7e-51 205.7 211 53.6
Thecc.06G007400 Theobroma cacao HOM05D001299 ORTHO05D009516 4.5e-51 204.9 211 52.6
Lj6g0006807 Lotus japonicus HOM05D001299 ORTHO05D009516 1.0e-50 203.8 211 53.1
COL.COLO4_26895 Corchorus olitorius HOM05D001299 ORTHO05D009516 1.3e-50 203.4 211 53.1
Medtr2g032540 Medicago truncatula HOM05D001299 ORTHO05D009516 1.3e-50 203.4 211 53.6
FvH4_3g11560 Fragaria vesca HOM05D001299 ORTHO05D009516 1.7e-50 203.0 211 50.7
FAN16G0158 Fragaria x ananassa HOM05D001299 ORTHO05D009516 1.7e-50 203.0 211 50.7
RcHm_v2.0_Chr5g0018511 Rosa chinensis HOM05D001299 ORTHO05D009516 3.8e-50 201.8 211 51.2
FAN25G0007 Fragaria x ananassa HOM05D001299 ORTHO05D009516 5.0e-50 201.4 211 50.7
MBI18_g26477_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 5.0e-50 201.4 207 53.6
Phvul.006G122300 Phaseolus vulgaris HOM05D001299 ORTHO05D009516 5.0e-50 201.4 211 53.1
ClCG01G008880 Citrullus lanatus HOM05D001299 ORTHO05D009516 6.5e-50 201.1 201 53.2
Sabra11G0144300 Salix brachista HOM05D001299 ORTHO05D009516 8.5e-50 200.7 211 53.1
Solyc02g069620.4 Solanum lycopersicum HOM05D001299 ORTHO05D009516 8.5e-50 200.7 211 51.2
Psat1g163720 Pisum sativum HOM05D001299 ORTHO05D009516 1.5e-49 199.9 211 53.1
VMungo0540G0517 Vigna mungo HOM05D001299 ORTHO05D009516 1.5e-49 199.9 211 52.1
FAN21G1530 Fragaria x ananassa HOM05D001299 ORTHO05D009516 1.9e-49 199.5 211 50.2
Nn7g37865 Nelumbo nucifera HOM05D001299 ORTHO05D009516 2.5e-49 199.1 211 50.7
CANSAT35G1957 Cannabis sativa HOM05D001299 ORTHO05D009516 4.2e-49 198.4 200 54.5
Cc09_g07140 Coffea canephora HOM05D001299 ORTHO05D009516 4.2e-49 198.4 205 51.2
Sopen02g018750 Solanum pennellii HOM05D001299 ORTHO05D009516 5.5e-49 198.0 211 50.7
CSS0034631 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 7.2e-49 197.6 170 65.3
Ca_00935_v3 Cicer arietinum L. HOM05D001299 ORTHO05D009516 7.2e-49 197.6 211 52.6
Glyma.15G136200 Glycine max HOM05D001299 ORTHO05D009516 7.2e-49 197.6 211 51.7
CAN.G675.34 Capsicum annuum HOM05D001299 ORTHO05D009516 9.4e-49 197.2 201 52.7
Manes.03G067266 Manihot esculenta HOM05D001299 ORTHO05D009516 9.4e-49 197.2 212 51.4
Lj1A1156T42 Lonicera japonica HOM05D001299 ORTHO05D009516 1.2e-48 196.8 201 53.2
Lalb_Chr15g0089001 Lupinus albus HOM05D001299 ORTHO05D009516 1.6e-48 196.4 214 50.9
Eucgr.D01028 Eucalyptus grandis HOM05D001299 ORTHO05D009516 2.7e-48 195.7 211 49.3
MSTRG.16317 Avicennia marina HOM05D001299 ORTHO05D009516 6.1e-48 194.5 211 49.3
MD10G1240700 Malus domestica HOM05D001299 ORTHO05D009516 1.0e-47 193.7 211 49.3
MELO3C021811.2 Cucumis melo HOM05D001299 ORTHO05D009516 1.4e-47 193.4 236 47.5
Duzib235G0189 Durio zibethinus HOM05D001299 ORTHO05D009516 1.8e-47 193.0 211 50.7
SalBow8G0840 Salvia bowleyana HOM05D001299 ORTHO05D009516 1.8e-47 193.0 211 49.3
SalBow8G5388 Salvia bowleyana HOM05D001299 ORTHO05D009516 1.8e-47 193.0 211 49.3
Gorai.010G142100 Gossypium raimondii HOM05D001299 ORTHO05D009516 2.3e-47 192.6 211 49.8
Gohir.D06G121900 Gossypium hirsutum HOM05D001299 ORTHO05D009516 3.0e-47 192.2 211 49.8
arahy.Tifrunner.gnm1.ann1.85QD0P Arachis hypogaea HOM05D001299 ORTHO05D009516 4.0e-47 191.8 211 50.7
Prupe.4G102900 Prunus persica HOM05D001299 ORTHO05D009516 4.0e-47 191.8 211 49.3
Migut.M01940 Erythranthe guttata HOM05D001299 ORTHO05D009516 6.8e-47 191.0 212 50.9
arahy.Tifrunner.gnm1.ann1.ZN1LAP Arachis hypogaea HOM05D001299 ORTHO05D009516 8.8e-47 190.7 201 52.7
Lsat_1_v5_gn_1_130040 Lactuca sativa HOM05D001299 ORTHO05D009516 8.8e-47 190.7 213 49.8
TPR.G15970 Trifolium pratense HOM05D001299 ORTHO05D009516 8.8e-47 190.7 211 51.2
THA.LOC104806244 Tarenaya hassleriana HOM05D001299 ORTHO05D009516 1.5e-46 189.9 199 50.8
Nitab4.5_0010415g0020 Nicotiana tabacum HOM05D001299 ORTHO05D009516 2.0e-46 189.5 240 46.7
Nitab4.5_0007613g0040 Nicotiana tabacum HOM05D001299 ORTHO05D009516 3.4e-46 188.7 240 45.8
Atru.chr10.662 Acer truncatum HOM05D001299 ORTHO05D009516 7.5e-46 187.6 212 49.5
HanXRQChr11g0341271 Helianthus annuus HOM05D001299 ORTHO05D009516 6.3e-45 184.5 211 48.3
PGSC0003DMG400021135 Solanum tuberosum HOM05D001299 ORTHO05D009516 3.1e-44 182.2 231 45.9
ATR1098G024 Amborella trichopoda HOM05D001299 ORTHO05D009516 5.4e-44 181.4 205 48.8
A06p47140 Brassica napus HOM05D001299 ORTHO05D009516 1.2e-43 180.3 202 47.5
Aa31LG9G8690 Aethionema arabicum HOM05D001299 ORTHO05D009516 2.0e-43 179.5 202 48.0
CsaV3_1G037750 Cucumis sativus L. HOM05D001299 ORTHO05D009516 2.0e-43 179.5 186 52.7
TWI38G0147 Tripterygium wilfordii HOM05D001299 ORTHO05D009516 2.0e-43 179.5 211 46.0
BcaC06g34545 Brassica carinata HOM05D001299 ORTHO05D009516 5.9e-43 177.9 203 47.3
CSS0009698 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 5.9e-43 177.9 161 61.5
BcaC06g31610 Brassica carinata HOM05D001299 ORTHO05D009516 1.0e-42 177.2 202 46.5
CSS0019604 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.0e-42 177.2 181 56.9
Sp2g09310 Schrenkiella parvula HOM05D001299 ORTHO05D009516 1.0e-42 177.2 202 47.0
CSS0007995 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.3e-42 176.8 160 61.2
BraA06t27586Z Brassica rapa HOM05D001299 ORTHO05D009516 2.2e-42 176.0 210 45.7
Os03g0781400 Oryza sativa ssp. japonica HOM05D001299 ORTHO05D009516 2.2e-42 176.0 216 46.8
C07p27350 Brassica napus HOM05D001299 ORTHO05D009516 3.8e-42 175.3 210 45.7
BolC7t43265H Brassica oleracea HOM05D001299 ORTHO05D009516 3.8e-42 175.3 210 45.7
Thhalv10000979m.g Eutrema salsugineum HOM05D001299 ORTHO05D009516 6.5e-42 174.5 202 46.5
Cpa.g.sc285.1 Carica papaya HOM05D001299 ORTHO05D009516 8.5e-42 174.1 212 49.5
AL8G15300 Arabidopsis lyrata HOM05D001299 ORTHO05D009516 2.5e-41 172.6 202 44.6
CSS0011897 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 3.2e-41 172.2 161 59.6
Carub.0008s0398 Capsella rubella HOM05D001299 ORTHO05D009516 7.2e-41 171.0 202 46.5
AT5G44520 Arabidopsis thaliana HOM05D001299 ORTHO05D009516 2.7e-40 169.1 202 44.6
Peaxi162Scf00195g00521 Petunia axillaris HOM05D001299 ORTHO05D009516 8.3e-37 157.5 223 42.6
MBI18_g14310_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 1.1e-36 157.1 167 51.5
CiPaw.10G111000 Carya illinoinensis HOM05D001299 ORTHO05D009516 1.1e-33 147.1 96 71.9
SGA_v2.0_scaffold298G47639 Striga asiatica HOM05D001299 ORTHO05D009516 1.5e-33 146.7 97 68.0
Pp3c16_13350 Physcomitrium patens HOM05D001299 ORTHO05D009516 3.3e-33 145.6 201 40.3
Ciclev10015984m.g Citrus clementina HOM05D001299 ORTHO05D009516 1.0e-31 140.6 97 64.9
CSS0023575 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 3.7e-29 132.1 174 47.7
Glyma.09G030500 Glycine max HOM05D001299 ORTHO05D009516 9.5e-25 117.5 83 63.9
Gohir.A06G118100 Gossypium hirsutum HOM05D001299 ORTHO05D009516 5.4e-20 101.7 145 43.4
CDE03G0248 Ceratophyllum demersum HOM05D001299 ORTHO05D009516 3.0e-18 95.9 145 40.7
QL05p065109 Quercus lobata HOM05D001299 ORTHO05D009516 4.7e-16 88.6 59 74.6
PRCOL_00006791 Prasinoderma coloniale HOM05D001299 ORTHO05D009516 1.4e-15 87.0 114 39.5
Oeu063345.2 Olea europaea HOM05D001299 ORTHO05D009516 3.1e-15 85.9 61 73.8
Cre07.g314600 Chlamydomonas reinhardtii HOM05D001299 ORTHO05D009516 1.5e-14 83.6 211 29.4
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 7.5e-14 81.3 45 77.8
MCO05G574 Micromonas commoda HOM05D001299 ORTHO05D009516 2.1e-11 73.2 108 37.0
Pp3c16_10280 Physcomitrium patens HOM05D001299 ORTHO05D001985 2.3e-10 69.7 203 27.6
CARHR178590 Cardamine hirsuta HOM05D001299 ORTHO05D009516 6.6e-10 68.2 59 54.2
Lj6g0028150 Lotus japonicus HOM05D001299 ORTHO05D009516 8.6e-10 67.8 98 44.9
Pp3c5_21490 Physcomitrium patens HOM05D001299 ORTHO05D001985 8.6e-10 67.8 203 27.1
Pp3c5_830 Physcomitrium patens HOM05D001299 ORTHO05D009516 8.6e-10 67.8 152 33.6
CBR_g39237 Chara braunii HOM05D001299 ORTHO05D001985 1.5e-09 67.0 199 28.1
SMO367G0722 Selaginella moellendorffii HOM05D001299 ORTHO05D001985 4.3e-09 65.5 194 26.8
Mapoly0213s0005 Marchantia polymorpha HOM05D001299 ORTHO05D001985 7.3e-09 64.7 203 25.6
MCO09G104 Micromonas commoda HOM05D001299 ORTHO05D001985 7.3e-09 64.7 198 27.8
Potri.001G225700 Populus trichocarpa HOM05D001299 ORTHO05D001985 7.3e-09 64.7 199 26.1
CBR_g28662 Chara braunii HOM05D001299 ORTHO05D001985 1.6e-08 63.5 199 27.6
CDE10G0303 Ceratophyllum demersum HOM05D001299 ORTHO05D001985 4.7e-08 62.0 174 27.0
PGSC0003DMG400030509 Solanum tuberosum HOM05D001299 ORTHO05D001985 6.2e-08 61.6 198 25.8
Zm00001eb213570 Zea mays HOM05D001299 ORTHO05D009516 8.1e-08 61.2 58 56.9
CBR_g50124 Chara braunii HOM05D001299 ORTHO05D001985 1.1e-07 60.8 199 25.1
Sabra16G0134200 Salix brachista HOM05D001299 ORTHO05D001985 1.4e-07 60.5 199 25.6
Prupe.1G322200 Prunus persica HOM05D001299 ORTHO05D001985 1.8e-07 60.1 198 25.8
Zm00001eb301210 Zea mays HOM05D001299 ORTHO05D001985 1.8e-07 60.1 202 23.8
Manes.02G135000 Manihot esculenta HOM05D001299 ORTHO05D001985 3.1e-07 59.3 198 24.2
Manes.14G135500 Manihot esculenta HOM05D001299 ORTHO05D001985 4.0e-07 58.9 197 23.4
Nn7g36808 Nelumbo nucifera HOM05D001299 ORTHO05D013156 4.0e-07 58.9 159 29.6
Solyc05g008370.2 Solanum lycopersicum HOM05D001299 ORTHO05D001985 4.0e-07 58.9 206 25.7
Sopen05g004200 Solanum pennellii HOM05D001299 ORTHO05D001985 5.2e-07 58.5 198 25.3
CsaV3_5G034910 Cucumis sativus L. HOM05D001299 ORTHO05D001985 1.2e-06 57.4 198 25.3
Sabra08G0096400 Salix brachista HOM05D001299 ORTHO05D001985 1.2e-06 57.4 201 23.9
arahy.Tifrunner.gnm1.ann1.IMCF17 Arachis hypogaea HOM05D001299 ORTHO05D001985 1.5e-06 57.0 198 24.7
TAR362G1204 Trochodendron aralioides HOM05D001299 ORTHO05D001985 1.5e-06 57.0 198 25.8
Pp3c19_7350 Physcomitrium patens HOM05D001299 ORTHO05D013156 2.0e-06 56.6 192 27.1
TAR636G0103 Trochodendron aralioides HOM05D001299 ORTHO05D001985 2.0e-06 56.6 198 23.7
Hund06960 Selenicereus undatus HOM05D001299 ORTHO05D001985 2.6e-06 56.2 199 25.6
TAR636G3567 Trochodendron aralioides HOM05D001299 ORTHO05D001985 2.6e-06 56.2 198 25.3
arahy.Tifrunner.gnm1.ann1.6YEN7W Arachis hypogaea HOM05D001299 ORTHO05D001985 3.4e-06 55.8 198 24.7
Cpa.g.sc65.113 Carica papaya HOM05D001299 ORTHO05D001985 3.4e-06 55.8 199 25.1
ClCG05G022210 Citrullus lanatus HOM05D001299 ORTHO05D001985 3.4e-06 55.8 198 24.7
VMungo0251G0682 Vigna mungo HOM05D001299 ORTHO05D001985 3.4e-06 55.8 198 24.7
Lj3P875T18 Lonicera japonica HOM05D001299 ORTHO05D001985 5.8e-06 55.1 198 24.2
Lalb_Chr06g0165631 Lupinus albus HOM05D001299 ORTHO05D001985 5.8e-06 55.1 199 25.1
Potri.008G127600 Populus trichocarpa HOM05D001299 ORTHO05D001985 5.8e-06 55.1 201 22.4
Atru.chr11.382 Acer truncatum HOM05D001299 ORTHO05D001985 7.6e-06 54.7 198 23.2
Lj5g0026699 Lotus japonicus HOM05D001299 ORTHO05D001985 7.6e-06 54.7 198 24.2
RcHm_v2.0_Chr3g0451421 Rosa chinensis HOM05D001299 ORTHO05D001985 7.6e-06 54.7 202 23.3
CANSAT01G0158 Cannabis sativa HOM05D001299 ORTHO05D001985 9.9e-06 54.3 198 24.7
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 9.9e-06 54.3 198 24.7


User provided reference genes

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