Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.2e-192 676.4 367 100.0
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.2e-192 676.4 367 100.0
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 4.2e-68 262.7 368 52.7
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.0e-63 245.4 208 65.9
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 3.5e-62 243.0 368 48.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 3.4e-57 226.5 210 61.0
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 3.7e-56 223.0 209 60.3
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.7e-53 214.2 330 48.8
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.8e-50 204.1 202 57.4
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 3.1e-50 203.4 207 54.6
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 5.2e-50 202.6 189 58.2
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.5e-49 201.1 211 57.8
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 2.0e-49 200.7 208 56.2
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 2.0e-49 200.7 212 53.8
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 2.6e-49 200.3 209 54.5
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 3.4e-49 199.9 212 52.8
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 3.4e-49 199.9 211 56.9
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 5.8e-49 199.1 190 58.9
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.8e-49 199.1 190 58.9
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 5.8e-49 199.1 213 54.9
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 7.5e-49 198.7 208 55.3
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.3e-48 198.0 208 55.3
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-48 198.0 190 58.9
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.3e-48 198.0 211 54.0
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.3e-48 198.0 207 53.6
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 3.7e-48 196.4 212 54.7
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 3.7e-48 196.4 210 54.8
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 4.9e-48 196.1 214 53.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.4e-48 195.7 190 58.4
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 6.4e-48 195.7 209 52.6
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 8.3e-48 195.3 185 56.8
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.1e-47 194.9 211 53.6
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-47 194.9 330 40.9
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 1.9e-47 194.1 210 52.4
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 4.1e-47 193.0 210 53.8
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 4.1e-47 193.0 211 55.0
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 1.2e-46 191.4 208 54.3
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.0e-46 190.7 206 52.4
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.7e-46 190.3 212 55.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.5e-46 189.9 208 53.8
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 4.6e-46 189.5 211 52.1
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.3e-45 188.0 226 50.0
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.3e-45 187.2 210 55.2
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.0e-45 186.8 207 53.1
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.6e-45 185.7 212 52.4
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-44 184.9 211 52.1
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 3.3e-44 183.3 208 51.9
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 5.6e-44 182.6 210 51.9
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 9.5e-44 181.8 171 59.6
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.5e-44 181.8 191 53.9
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-43 181.4 191 53.9
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-43 181.4 191 53.9
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.2e-43 181.4 210 50.5
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.2e-43 181.4 164 60.4
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.6e-43 181.0 212 52.4
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 2.1e-43 180.6 202 52.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-43 179.9 192 53.1
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 3.6e-43 179.9 178 55.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 4.7e-43 179.5 173 56.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.2e-43 179.1 171 59.6
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 8.1e-43 178.7 369 43.1
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-43 178.7 191 52.9
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-42 178.3 330 39.4
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-42 178.3 172 58.7
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.1e-42 178.3 199 53.3
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.8e-42 177.6 209 49.3
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-42 177.2 191 52.9
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-42 177.2 190 52.6
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 6.8e-42 175.6 164 57.9
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 8.9e-42 175.3 213 51.2
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.2e-41 174.9 205 50.2
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.5e-41 174.5 162 57.4
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 4.4e-41 172.9 165 57.6
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.3e-40 171.4 206 49.0
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.9e-39 167.5 182 53.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 3.2e-39 166.8 205 51.2
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.1e-39 166.4 165 57.0
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 9.2e-39 165.2 184 52.7
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.6e-38 164.5 179 53.6
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.7e-38 163.7 176 51.1
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.6e-38 162.9 206 49.0
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 6.0e-38 162.5 177 52.0
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 6.0e-38 162.5 218 49.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 7.8e-38 162.2 171 53.8
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 7.8e-38 162.2 159 56.6
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.3e-37 161.4 208 46.2
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.3e-37 160.6 156 57.1
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 3.9e-37 159.8 161 55.3
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 6.6e-37 159.1 208 47.6
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 6.6e-37 159.1 213 47.4
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 6.6e-37 159.1 212 47.2
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 8.6e-37 158.7 208 47.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.1e-36 158.3 211 46.4
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-36 157.5 326 39.0
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.5e-36 157.1 214 47.2
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 5.6e-36 156.0 208 44.7
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 7.3e-36 155.6 213 45.1
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 9.5e-36 155.2 210 46.2
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 3.6e-35 153.3 209 44.0
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.7e-35 152.9 81 90.1
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 1.1e-34 151.8 210 46.2
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 1.4e-34 151.4 79 89.9
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.4e-34 151.4 208 45.7
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.1e-34 150.2 169 47.9
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.2e-34 149.4 106 73.6
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 8.9e-34 148.7 174 48.9
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 8.9e-34 148.7 174 48.9
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 8.9e-34 148.7 174 48.9
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.5e-33 147.9 78 87.2
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 2.0e-33 147.5 208 43.3
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.4e-33 146.7 78 89.7
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 4.4e-33 146.4 174 47.7
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 5.8e-33 146.0 172 48.3
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.8e-33 146.0 326 38.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 9.9e-33 145.2 171 48.5
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 9.9e-33 145.2 178 46.1
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.3e-32 144.8 209 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 2.2e-32 144.1 105 69.5
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 6.4e-32 142.5 200 45.5
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.4e-31 141.4 74 89.2
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.4e-31 141.4 83 78.3
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 9.2e-31 138.7 73 87.7
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.2e-31 138.7 210 44.8
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.0e-29 135.2 72 86.1
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.7e-29 134.4 78 80.8
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 3.6e-27 126.7 166 44.0
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 4.0e-26 123.2 214 43.0
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.9e-20 104.4 66 71.2
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 1.1e-10 72.0 84 45.2
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.1e-10 70.5 77 54.5
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 3.4e-09 67.0 81 49.4
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.1e-07 62.0 39 79.5


User provided reference genes

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