Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 1.5e-270 935.6 478 100.0
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 4.0e-183 645.2 410 83.4
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 2.5e-137 493.0 407 67.3
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 1.0e-114 417.9 387 59.7
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 8.7e-114 414.8 371 60.4
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.9e-113 413.7 371 60.4
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 2.8e-112 409.8 386 58.3
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 2.8e-112 409.8 381 61.2
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 1.4e-111 407.5 386 58.0
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 9.0e-111 404.8 368 60.3
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 1.2e-110 404.4 434 53.0
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 2.6e-110 403.3 326 63.5
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 2.6e-110 403.3 326 63.5
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 7.6e-110 401.7 357 61.3
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 1.0e-109 401.4 347 61.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.0e-109 401.4 380 60.5
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 1.7e-109 400.6 392 57.7
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 1.7e-109 400.6 391 59.1
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 3.8e-109 399.4 377 58.9
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 6.5e-109 398.7 348 60.9
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 2.5e-108 396.7 395 57.7
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 3.2e-108 396.4 373 57.9
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 4.2e-108 396.0 348 60.6
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 9.3e-108 394.8 316 64.2
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 9.3e-108 394.8 317 64.4
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 2.1e-107 393.7 317 63.7
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.1e-107 393.7 317 63.7
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 4.6e-107 392.5 317 63.4
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 6.0e-107 392.1 386 56.7
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 1.3e-106 391.0 384 56.0
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 3.9e-106 389.4 317 63.4
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 2.8e-104 383.3 317 63.1
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 8.2e-104 381.7 315 62.2
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 1.1e-103 381.3 349 58.7
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 1.8e-103 380.6 362 57.2
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 2.4e-103 380.2 383 54.8
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 2.4e-103 380.2 316 63.0
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 3.1e-103 379.8 315 62.2
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 4.1e-103 379.4 336 60.4
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 5.3e-103 379.0 380 55.0
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 5.3e-103 379.0 421 52.3
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 6.9e-103 378.6 410 53.2
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 2.0e-102 377.1 378 55.3
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 3.4e-102 376.3 378 55.8
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 4.5e-102 375.9 331 58.9
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 1.0e-101 374.8 370 54.3
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 2.9e-101 373.2 381 55.4
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 1.9e-100 370.5 312 61.5
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 2.5e-100 370.2 384 55.2
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 7.2e-100 368.6 329 61.4
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 2.1e-99 367.1 370 54.1
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 1.0e-98 364.8 367 54.5
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 3.0e-98 363.2 367 55.3
vmacro12496 Vaccinium macrocarpon HOM05D005981 ORTHO05D007551 3.0e-98 363.2 405 55.1
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 3.9e-98 362.8 379 54.6
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 5.1e-98 362.5 372 54.0
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 6.7e-98 362.1 367 55.3
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 8.7e-98 361.7 330 57.3
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 8.7e-98 361.7 330 57.3
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.1e-97 361.3 370 54.3
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 1.1e-97 361.3 369 54.2
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 1.5e-97 360.9 361 55.1
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 1.9e-97 360.5 327 58.4
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 2.5e-97 360.1 367 55.3
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 5.7e-97 359.0 316 59.8
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 9.7e-97 358.2 317 59.3
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 9.7e-97 358.2 330 56.7
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 2.2e-96 357.1 316 58.9
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 1.8e-95 354.0 315 59.4
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 4.1e-95 352.8 345 56.8
Peaxi162Scf00495g00015 Petunia axillaris HOM05D005981 ORTHO05D007551 6.9e-95 352.1 315 59.0
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 1.5e-94 350.9 317 59.0
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 2.6e-94 350.1 345 52.8
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 2.1e-91 340.5 361 51.5
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 4.6e-91 339.3 315 57.5
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 6.1e-91 339.0 310 56.8
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 7.9e-91 338.6 332 58.4
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 7.9e-91 338.6 332 58.4
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 2.3e-90 337.0 362 54.1
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 1.1e-89 334.7 341 56.3
MD05G1040800 Malus domestica HOM05D005981 ORTHO05D007551 4.8e-88 329.3 297 58.6
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 8.2e-88 328.6 314 57.3
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 1.1e-87 328.2 332 53.3
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 1.7e-85 320.9 271 62.4
TWI60G0628 Tripterygium wilfordii HOM05D005981 ORTHO05D007551 2.2e-85 320.5 275 61.5
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 2.7e-83 313.5 331 52.6
DCAR_023098 Daucus carota HOM05D005981 ORTHO05D007551 3.0e-82 310.1 271 60.9
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 5.2e-82 309.3 354 50.6
TAR381G0932 Trochodendron aralioides HOM05D005981 ORTHO05D007551 4.2e-76 289.7 244 64.3
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 4.5e-70 269.6 271 53.5
Mapoly0035s0044 Marchantia polymorpha HOM05D005981 ORTHO05D007551 8.5e-69 265.4 316 46.2
SMO271G0041 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.0e-66 258.5 316 44.9
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 2.3e-66 257.3 316 44.9
MBI17_g01761_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 2.7e-62 243.8 214 59.8
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 1.7e-61 241.1 328 41.5
SMO174G0158 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 2.2e-61 240.7 316 43.0
Lalb_Chr03g0035881 Lupinus albus HOM05D005981 ORTHO05D007551 8.5e-61 238.8 213 60.1
Dinv41690 Davidia involucrata HOM05D005981 ORTHO05D007551 1.8e-58 231.1 221 66.5
VMungo0464G1554 Vigna mungo HOM05D005981 ORTHO05D007551 3.0e-58 230.3 213 56.8
HPP92_000081 Vanilla planifolia HOM05D005981 ORTHO05D007551 6.3e-56 222.6 231 51.5
Ah.05g177990 Amaranthus hybridus HOM05D005981 ORTHO05D001449 9.2e-55 218.8 214 54.7
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 2.3e-53 214.2 267 45.7
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 2.7e-46 190.7 304 40.8
Dinv41689 Davidia involucrata HOM05D005981 ORTHO05D007551 4.7e-43 179.9 165 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1289 Anthoceros agrestis HOM05D005981 ORTHO05D007551 6.8e-42 176.0 226 43.8
Zm00001eb366510 Zea mays HOM05D005981 ORTHO05D007551 2.9e-40 170.6 176 52.8
PGR102G3248 Punica granatum HOM05D005981 ORTHO05D007551 7.8e-38 162.5 166 53.0
Lalb_Chr03g0035891 Lupinus albus HOM05D005981 ORTHO05D007551 2.8e-35 154.1 157 54.8
CBR_g56098 Chara braunii HOM05D005981 ORTHO05D007551 3.1e-34 150.6 355 31.8
MSTRG.1517 Avicennia marina HOM05D005981 ORTHO05D007551 9.8e-33 145.6 83 81.9
COL.COLO4_36657 Corchorus olitorius HOM05D005981 ORTHO05D007551 4.9e-32 143.3 136 58.8
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 1.1e-31 142.1 81 85.2
PGSC0003DMG400009236 Solanum tuberosum HOM05D005981 ORTHO05D007551 9.2e-31 139.0 73 91.8
SMO174G0079 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.3e-29 135.2 183 42.1
SEGI_14270 Sequoiadendron giganteum HOM05D005981 ORTHO05D007551 2.0e-25 121.3 82 70.7
HPP92_000083 Vanilla planifolia HOM05D005981 ORTHO05D007551 1.4e-23 115.2 103 54.4
Glyma.02G074400 Glycine max HOM05D005981 ORTHO05D007551 3.9e-21 107.1 62 80.6
SMO308G0023 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 5.1e-21 106.7 92 56.5
SMO308G0062 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 5.1e-21 106.7 92 56.5
Ca_13999_v3 Cicer arietinum L. HOM05D002058 ORTHO05D009216 8.6e-21 105.9 101 56.4
Ca_27969_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 8.6e-21 105.9 101 56.4
Ah.12g061790 Amaranthus hybridus HOM05D005981 ORTHO05D007551 1.5e-20 105.1 72 68.1
Lsat_1_v5_gn_3_113600 Lactuca sativa HOM05D005981 ORTHO05D007551 6.2e-19 99.8 143 47.6
Lsat_1_v5_gn_3_113620 Lactuca sativa HOM05D005981 ORTHO05D007551 6.9e-18 96.3 106 50.0
Lsat_1_v5_gn_7_7380 Lactuca sativa HOM05D005981 ORTHO05D007551 6.9e-18 96.3 106 50.0
SMO271G0001 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 3.5e-14 84.0 73 61.6
SMO210G0005 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 6.0e-14 83.2 78 57.7
VMungo0464G0319 Vigna mungo HOM05D005981 ORTHO05D007551 7.8e-14 82.8 47 78.7
Ah.05g178000 Amaranthus hybridus HOM05D005981 ORTHO05D007551 3.0e-13 80.9 60 63.3
Haze_17917 Corylus avellana HOM05D005981 ORTHO05D007551 3.9e-13 80.5 121 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1809 Anthoceros agrestis HOM05D005531 ORTHO05D006332 1.9e-12 78.2 307 24.4
AagrBONN_evm.TU.Sc2ySwM_228.5815 Anthoceros agrestis HOM05D005531 ORTHO05D006332 2.1e-11 74.7 239 26.4
Cpa.g.sc66.54 Carica papaya HOM05D005981 ORTHO05D007551 4.8e-11 73.6 87 49.4
Nn7g37674 Nelumbo nucifera HOM05D005531 ORTHO05D006332 4.0e-10 70.5 365 22.2
PSO675G6185 Papaver somniferum HOM05D005531 ORTHO05D006332 5.3e-10 70.1 301 23.9
MBI08_g25563_MAGBIO Magnolia biondii HOM05D005531 ORTHO05D006332 9.0e-10 69.3 258 24.8
SalBow6G4103 Salvia bowleyana HOM05D005531 ORTHO05D006332 1.5e-09 68.6 270 24.4
SMO210G0002 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.5e-09 68.6 52 59.6
Mapoly0001s0155 Marchantia polymorpha HOM05D005531 ORTHO05D006332 2.6e-09 67.8 240 25.0
Pp3c16_17520 Physcomitrium patens HOM05D005531 ORTHO05D006332 2.6e-09 67.8 354 26.0
HPP92_024926 Vanilla planifolia HOM05D005531 ORTHO05D006332 2.2e-08 64.7 276 23.9
EL10Ac3g06068 Beta vulgaris HOM05D005531 ORTHO05D006332 2.9e-08 64.3 359 21.7
Aqoxy1G02291 Aquilegia oxysepala HOM05D005531 ORTHO05D006332 3.8e-08 63.9 348 22.7
PSO017G4245 Papaver somniferum HOM05D005531 ORTHO05D006332 3.8e-08 63.9 262 22.9
PSO675G8407 Papaver somniferum HOM05D005531 ORTHO05D006332 3.8e-08 63.9 262 23.3
TAR362G0104 Trochodendron aralioides HOM05D005531 ORTHO05D006332 3.8e-08 63.9 303 23.1
HPP92_024943 Vanilla planifolia HOM05D005531 ORTHO05D006332 8.4e-08 62.8 366 23.0
Rhsim02G0083700 Rhododendron simsii HOM05D005531 ORTHO05D006332 1.4e-07 62.0 246 23.6
Ciclev10021434m.g Citrus clementina HOM05D005531 ORTHO05D006332 2.4e-07 61.2 268 26.5
Oeu016608.2 Olea europaea HOM05D005531 ORTHO05D006332 2.4e-07 61.2 262 22.1
Eucgr.A00006 Eucalyptus grandis HOM05D005531 ORTHO05D006332 5.4e-07 60.1 248 23.8
Hund12388 Selenicereus undatus HOM05D005531 ORTHO05D006332 5.4e-07 60.1 250 23.6
CDE07G1035 Ceratophyllum demersum HOM05D005531 ORTHO05D006332 7.1e-07 59.7 262 22.9
Cc01_g03590 Coffea canephora HOM05D005531 ORTHO05D006332 7.1e-07 59.7 363 22.9
GSVIVG01038136001 Vitis vinifera HOM05D005531 ORTHO05D006332 7.1e-07 59.7 247 23.1
Os03g0227300 Oryza sativa ssp. japonica HOM05D005531 ORTHO05D006332 9.3e-07 59.3 262 21.4
Zm00001eb399280 Zea mays HOM05D005531 ORTHO05D006332 9.3e-07 59.3 269 22.3
AUR62002375 Chenopodium quinoa HOM05D005531 ORTHO05D006332 1.2e-06 58.9 216 23.6
Oeu021570.1 Olea europaea HOM05D005531 ORTHO05D006332 1.2e-06 58.9 262 21.4
CANSAT54G2817 Cannabis sativa HOM05D005531 ORTHO05D006332 1.6e-06 58.5 198 27.3
BraA09t39972Z Brassica rapa HOM05D005531 ORTHO05D006332 2.7e-06 57.8 384 20.8
CiPaw.01G171100 Carya illinoinensis HOM05D005531 ORTHO05D006332 2.7e-06 57.8 381 20.5
Lj4g0014314 Lotus japonicus HOM05D005531 ORTHO05D006332 3.5e-06 57.4 262 22.1
MD04G1048800 Malus domestica HOM05D005531 ORTHO05D006332 3.5e-06 57.4 392 23.7
Manes.04G036700 Manihot esculenta HOM05D005531 ORTHO05D006332 3.5e-06 57.4 261 25.3
Prupe.1G206500 Prunus persica HOM05D005531 ORTHO05D006332 3.5e-06 57.4 128 28.9
TPR.G23541 Trifolium pratense HOM05D005531 ORTHO05D006332 3.5e-06 57.4 262 22.1
COL.COLO4_07535 Corchorus olitorius HOM05D005531 ORTHO05D006332 4.6e-06 57.0 247 22.3
FAN13G1713 Fragaria x ananassa HOM05D005531 ORTHO05D006332 4.6e-06 57.0 262 22.9
FvH4_5g12060 Fragaria vesca HOM05D005531 ORTHO05D006332 6.0e-06 56.6 262 22.9
FAN04G0151 Fragaria x ananassa HOM05D005531 ORTHO05D006332 6.0e-06 56.6 262 22.9
FAN18G3014 Fragaria x ananassa HOM05D005531 ORTHO05D006332 6.0e-06 56.6 262 22.9
FAN18G3485 Fragaria x ananassa HOM05D005531 ORTHO05D006332 6.0e-06 56.6 262 22.9
PGR042G0031 Punica granatum HOM05D005531 ORTHO05D006332 6.0e-06 56.6 180 26.1
SGA_v2.0_scaffold25G10999 Striga asiatica HOM05D005531 ORTHO05D006332 6.0e-06 56.6 264 23.5
BcaNung06967 Brassica carinata HOM05D005531 ORTHO05D006332 7.9e-06 56.2 262 21.0
Glyma.07G208400 Glycine max HOM05D005531 ORTHO05D006332 7.9e-06 56.2 128 26.6
Psat7g121280 Pisum sativum HOM05D005531 ORTHO05D006332 7.9e-06 56.2 128 28.1
Thecc.04G166800 Theobroma cacao HOM05D005531 ORTHO05D006332 7.9e-06 56.2 262 22.5


User provided reference genes

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