Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 3.4e-84 315.1 171 100.0
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.4e-61 240.0 171 78.9
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 4.0e-61 238.4 171 78.9
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 4.0e-61 238.4 171 78.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.2e-60 236.9 171 74.9
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.6e-60 235.7 170 77.1
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 3.4e-60 235.3 168 76.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 5.8e-60 234.6 172 74.4
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.3e-59 233.4 171 78.4
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.7e-59 233.0 171 76.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.9e-59 232.3 175 73.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 3.7e-59 231.9 171 76.0
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 6.4e-59 231.1 171 76.6
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 6.4e-59 231.1 171 74.9
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 6.4e-59 231.1 172 76.2
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.1e-58 230.3 171 74.9
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.4e-58 229.9 172 76.7
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 3.2e-58 228.8 164 77.4
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 4.1e-58 228.4 171 74.3
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 7.1e-58 227.6 173 75.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 7.1e-58 227.6 166 72.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.1e-58 227.6 166 74.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 9.2e-58 227.3 169 74.0
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 9.2e-58 227.3 171 71.9
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 9.2e-58 227.3 171 74.3
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.2e-57 226.9 171 75.4
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.2e-57 226.9 171 73.7
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.6e-57 226.5 172 75.6
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.1e-57 226.1 172 72.7
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.7e-57 225.7 172 73.3
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.7e-57 225.7 173 73.4
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 4.6e-57 224.9 171 73.7
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.8e-57 224.2 172 71.5
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.0e-56 223.8 172 76.2
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.0e-56 223.8 172 76.2
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.3e-56 223.4 171 72.5
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.7e-56 223.0 172 71.5
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 2.3e-56 222.6 172 72.1
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 3.0e-56 222.2 172 74.4
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 3.9e-56 221.9 171 71.9
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 3.9e-56 221.9 171 72.5
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 5.1e-56 221.5 171 74.3
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 5.1e-56 221.5 165 76.4
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.1e-56 221.5 171 71.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 5.1e-56 221.5 172 71.5
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 5.1e-56 221.5 171 71.9
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 6.6e-56 221.1 171 71.3
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 6.6e-56 221.1 166 69.9
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 73.7
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.5e-55 219.9 171 71.9
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.5e-55 219.9 171 73.7
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-55 219.9 171 71.3
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.5e-55 219.9 166 69.3
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.5e-55 219.2 172 75.6
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.5e-55 219.2 167 71.9
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.5e-55 219.2 175 72.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.3e-55 218.8 175 71.4
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.3e-55 218.8 175 71.4
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 4.3e-55 218.4 172 70.9
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 4.3e-55 218.4 171 70.2
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.3e-55 218.4 167 72.5
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 4.3e-55 218.4 173 72.3
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 4.3e-55 218.4 171 71.9
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.6e-55 218.0 176 69.9
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 5.6e-55 218.0 171 71.3
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 5.6e-55 218.0 173 72.8
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 9.5e-55 217.2 174 71.8
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 9.5e-55 217.2 171 70.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 9.5e-55 217.2 172 70.3
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.2e-54 216.9 172 71.5
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-54 216.1 173 72.3
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-54 216.1 173 69.9
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.1e-54 216.1 174 71.3
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 2.1e-54 216.1 172 70.3
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.1e-54 216.1 171 69.0
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 69.9
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 70.8
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 70.8
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 69.4
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.8e-54 215.7 173 69.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 70.8
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.8e-54 215.7 166 70.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 3.6e-54 215.3 171 67.8
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.7e-54 214.9 174 72.4
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 4.7e-54 214.9 172 70.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 4.7e-54 214.9 172 70.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 6.2e-54 214.5 173 69.4
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 8.1e-54 214.2 171 69.0
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 68.4
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 70.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-53 213.4 168 69.6
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 69.6
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 69.6
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 69.6
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.1e-53 212.2 171 69.6
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 3.1e-53 212.2 171 69.6
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.1e-53 212.2 172 70.3
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.0e-53 211.8 171 70.8
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 4.0e-53 211.8 166 69.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 6.8e-53 211.1 172 69.8
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 6.8e-53 211.1 171 69.0
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 68.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 4.4e-52 208.4 171 69.6
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 4.4e-52 208.4 171 69.0
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 4.4e-52 208.4 171 69.6
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 4.4e-52 208.4 171 67.8
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 5.8e-52 208.0 163 70.6
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 5.8e-52 208.0 172 68.6
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 5.8e-52 208.0 172 68.6
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 5.8e-52 208.0 171 67.3
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 9.9e-52 207.2 172 69.2
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 9.9e-52 207.2 172 69.2
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 9.9e-52 207.2 172 69.2
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-51 206.8 172 68.6
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.3e-51 206.8 171 67.8
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.2e-51 206.1 171 68.4
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.9e-51 205.7 167 68.9
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 8.3e-51 204.1 168 69.6
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 67.3
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 66.1
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.4e-50 202.6 166 68.1
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 3.2e-50 202.2 171 66.7
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 5.4e-50 201.4 168 67.9
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.2e-49 200.3 167 68.3
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.3e-48 196.8 167 67.1
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.3e-48 196.8 169 65.1
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.3e-48 196.8 157 72.0
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.3e-48 196.1 167 67.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.3e-48 196.1 166 65.1
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 3.9e-48 195.3 171 65.5
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.1e-48 194.9 169 63.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 5.1e-48 194.9 159 67.9
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 2.5e-47 192.6 174 66.1
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 8.1e-46 187.6 172 64.0
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.1e-45 187.2 175 63.4
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.1e-45 187.2 175 63.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 2.4e-45 186.0 166 65.1
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 9.9e-44 180.6 167 62.9
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.2e-43 179.5 172 60.5
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 6.4e-43 177.9 150 71.3
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.2e-42 175.6 102 81.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.6e-41 173.3 100 82.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 3.5e-41 172.2 166 61.4
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.6e-41 171.8 102 80.4
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.1e-39 167.2 100 77.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 2.6e-36 156.0 176 53.4
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.9e-35 152.5 149 63.8
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 3.5e-33 145.6 223 44.4
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 6.0e-33 144.8 175 46.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.5e-31 140.2 176 46.0
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.8e-29 133.3 171 47.4
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.1e-29 132.5 168 45.8
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 4.0e-29 132.1 174 48.9
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.0e-29 131.0 168 45.8
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 4.5e-28 128.6 145 49.0
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 2.9e-27 125.9 142 51.4
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.4e-26 122.9 70 77.1
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.6e-25 118.6 70 74.3
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 5.1e-24 115.2 176 48.9
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 1.2e-20 104.0 164 42.1
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 2.6e-20 102.8 168 41.7
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.5e-20 102.1 67 73.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.3e-15 85.9 81 55.6
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.6e-14 83.6 44 84.1
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.7e-06 55.8 73 61.6


User provided reference genes

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