Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.1e-197 692.2 355 100.0
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.7e-159 566.2 355 83.1
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 1.7e-159 566.2 358 82.7
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 4.4e-155 551.6 355 80.0
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.4e-153 546.6 355 79.4
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.4e-153 545.8 355 78.9
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.3e-151 540.0 359 79.1
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 6.6e-151 537.7 355 80.6
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 9.5e-150 533.9 357 78.7
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.6e-149 533.1 355 79.2
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.0e-147 526.2 356 76.4
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 7.6e-147 524.2 359 75.8
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.3e-146 523.5 355 75.5
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 8.4e-146 520.8 355 76.3
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 8.4e-146 520.8 359 76.0
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 1.9e-145 519.6 355 76.6
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 4.2e-145 518.5 357 75.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 7.1e-145 517.7 354 78.2
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 9.2e-145 517.3 356 74.7
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 7.8e-144 514.2 362 74.9
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 7.8e-144 514.2 355 74.6
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 1.3e-143 513.5 330 80.0
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.3e-143 513.5 358 76.3
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 3.0e-143 512.3 366 74.9
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 3.0e-143 512.3 317 84.2
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 5.1e-143 511.5 357 75.1
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.6e-143 511.1 355 75.2
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 2.5e-142 509.2 305 84.9
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.5e-142 509.2 355 74.4
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 2.5e-142 509.2 365 74.2
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.3e-142 508.4 337 79.5
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.3e-142 508.4 362 76.0
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 9.6e-142 507.3 356 74.2
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.2e-141 506.9 355 75.5
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.6e-141 506.5 332 80.7
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.1e-141 506.1 320 81.6
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 2.8e-141 505.8 370 72.7
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 8.1e-141 504.2 322 81.1
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 8.1e-141 504.2 356 73.3
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.8e-140 503.1 371 72.8
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 2.4e-140 502.7 318 80.5
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 2.4e-140 502.7 360 74.2
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.4e-139 498.8 355 75.2
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 6.4e-138 494.6 356 75.0
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 6.4e-138 494.6 356 73.3
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.1e-137 493.8 355 74.1
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 4.2e-137 491.9 353 74.2
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.1e-136 489.6 355 73.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 4.6e-136 488.4 351 73.5
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 6.0e-136 488.0 338 76.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.3e-135 486.1 354 73.7
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 2.3e-135 486.1 350 74.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 8.7e-135 484.2 353 73.1
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 9.6e-134 480.7 357 72.5
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.3e-133 480.3 344 75.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.6e-133 479.9 351 70.9
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.1e-133 479.6 349 75.6
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 4.8e-133 478.4 358 73.5
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 4.8e-133 478.4 353 73.1
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 6.2e-133 478.0 352 70.5
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 8.1e-133 477.6 340 73.2
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.1e-132 477.2 344 72.4
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 4.0e-132 475.3 315 76.2
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 5.3e-132 474.9 317 75.7
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 9.0e-132 474.2 319 75.2
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.2e-131 473.8 315 75.9
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 2.0e-131 473.0 314 75.5
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 3.4e-131 472.2 340 73.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 4.5e-131 471.9 322 74.5
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.5e-131 471.9 355 73.2
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 5.8e-131 471.5 319 75.2
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.6e-131 471.1 340 73.5
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 7.6e-131 471.1 344 74.4
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 9.9e-131 470.7 341 73.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.7e-130 469.9 328 74.1
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 3.8e-130 468.8 357 70.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 6.4e-130 468.0 318 75.8
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 6.4e-130 468.0 320 74.7
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 6.4e-130 468.0 320 74.7
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 6.4e-130 468.0 319 74.6
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 8.4e-130 467.6 320 75.6
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 8.4e-130 467.6 355 71.3
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.4e-129 466.8 320 74.4
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.4e-129 466.8 291 82.5
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.4e-129 466.1 319 74.6
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 3.2e-129 465.7 351 68.9
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 2.7e-128 462.6 357 69.7
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 3.0e-127 459.1 365 70.4
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 4.3e-126 455.3 352 67.6
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.4e-126 454.5 352 67.9
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.6e-125 453.4 352 67.9
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 2.1e-125 453.0 352 67.6
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.1e-124 450.7 302 79.8
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.3e-124 448.4 352 67.6
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.2e-123 447.2 329 72.6
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.7e-122 443.4 261 85.4
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.7e-122 443.4 361 65.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 2.2e-122 443.0 372 64.5
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.5e-121 439.5 352 68.8
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 2.1e-120 436.4 315 72.4
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.7e-120 436.0 352 66.2
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 7.9e-120 434.5 356 69.1
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 6.7e-119 431.4 340 69.1
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.1e-118 430.6 354 67.2
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 3.3e-118 429.1 354 66.9
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 2.0e-115 419.9 363 65.3
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 7.9e-112 407.9 356 63.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.9e-112 407.9 352 62.8
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 3.0e-111 406.0 262 77.9
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 5.7e-110 401.7 331 64.7
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 9.7e-110 401.0 356 61.8
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.8e-109 398.7 297 70.0
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.1e-108 397.5 260 79.2
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 5.3e-108 395.2 257 79.8
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 8.5e-106 387.9 319 64.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 8.5e-106 387.9 356 62.6
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.4e-105 387.1 263 73.4
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.0e-103 380.9 347 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.2e-97 358.2 245 76.3
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.3e-90 337.4 252 66.3
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 6.1e-88 328.6 256 65.2
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.4e-87 327.4 254 71.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 4.8e-85 318.9 315 61.0
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 4.5e-83 312.4 177 92.1
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.1e-76 289.3 252 59.1
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 2.5e-73 280.0 200 72.0
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 2.8e-69 266.5 191 77.0
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 3.2e-52 209.9 157 71.3
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 2.4e-44 183.7 118 72.9
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 3.2e-44 183.3 103 91.3
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.1e-43 180.6 225 50.7
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 4.6e-35 152.9 103 76.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 4.6e-35 152.9 103 76.7
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.6e-32 144.4 103 68.0
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 3.4e-22 110.2 63 88.9
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.1e-20 105.1 211 31.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.2e-12 77.0 43 81.4


User provided reference genes

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