Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.2e-259 897.9 457 100.0
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 9.4e-259 896.3 457 99.8
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 7.8e-221 770.4 461 86.3
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 6.9e-209 730.7 459 81.9
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 6.9e-209 730.7 462 82.3
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.5e-205 718.4 469 81.4
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.3e-204 716.5 459 81.0
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 2.3e-204 715.7 461 80.5
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 3.9e-204 714.9 458 79.7
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 3.3e-203 711.8 460 78.9
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 9.6e-203 710.3 457 82.3
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 3.1e-201 705.3 463 77.5
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 4.0e-201 704.9 458 78.4
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 3.4e-200 701.8 460 78.5
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.9e-198 696.0 460 78.5
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 4.2e-198 694.9 461 77.7
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 9.3e-198 693.7 461 77.4
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.6e-197 693.0 468 75.2
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 2.1e-197 692.6 461 77.0
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.7e-197 692.2 454 79.7
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 3.5e-197 691.8 461 77.4
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 4.6e-197 691.4 461 77.7
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.0e-196 690.3 459 76.9
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.0e-196 690.3 460 76.5
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.3e-196 689.9 461 77.0
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.3e-196 689.9 462 75.3
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.8e-196 689.5 461 77.2
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.8e-196 689.5 461 77.4
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 6.7e-196 687.6 468 76.9
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.7e-196 687.6 461 77.7
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 1.5e-195 686.4 461 76.6
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 4.3e-195 684.9 462 76.4
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 1.3e-194 683.3 481 74.0
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.1e-194 682.6 464 76.7
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.8e-194 682.2 493 73.0
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 3.6e-194 681.8 461 77.0
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 4.8e-194 681.4 467 75.2
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.4e-193 679.9 460 75.0
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.8e-193 679.5 464 74.8
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 4.0e-193 678.3 468 77.1
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.5e-192 676.4 465 75.7
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-192 675.6 460 75.0
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.6e-192 675.6 460 76.1
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 4.5e-192 674.9 460 75.0
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 5.8e-192 674.5 465 75.7
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 5.8e-192 674.5 465 75.9
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 9.9e-192 673.7 468 75.9
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.3e-191 673.3 468 75.9
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 4.9e-191 671.4 465 75.7
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 6.4e-191 671.0 468 75.6
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 8.4e-191 670.6 465 75.3
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.4e-190 669.8 461 73.8
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.9e-190 669.5 459 76.7
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 4.6e-189 664.8 460 73.9
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 6.0e-189 664.5 460 74.1
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 6.0e-189 664.5 468 74.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.0e-189 664.5 487 73.1
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 6.0e-189 664.5 441 77.1
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 1.8e-188 662.9 467 72.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.7e-188 661.0 465 74.6
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.1e-187 660.2 463 73.0
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.5e-187 659.8 458 74.0
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.5e-187 659.8 470 71.7
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.5e-187 659.8 460 74.8
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 2.5e-187 659.1 461 74.2
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 4.3e-187 658.3 460 73.3
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 7.4e-187 657.5 509 68.8
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 9.6e-187 657.1 461 73.8
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.3e-186 656.8 462 74.7
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.3e-186 656.8 427 79.6
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 2.1e-186 656.0 460 74.3
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.8e-186 655.6 463 72.8
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.4e-185 653.3 427 78.9
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.4e-185 653.3 465 74.4
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 5.3e-185 651.4 463 72.8
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 5.8e-184 647.9 463 71.7
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 5.8e-184 647.9 463 73.4
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 1.0e-183 647.1 463 72.1
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.7e-183 646.4 468 71.8
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 6.5e-183 644.4 463 71.1
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.4e-182 643.3 398 80.4
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 3.2e-182 642.1 434 76.7
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 3.2e-182 642.1 468 72.4
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.2e-181 640.2 401 78.6
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 6.0e-181 637.9 463 71.5
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 6.0e-181 637.9 463 71.5
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 6.0e-181 637.9 463 71.5
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.8e-180 636.3 469 71.2
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 1.8e-180 636.3 463 70.8
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.0e-180 635.6 470 70.2
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 2.5e-179 632.5 420 76.0
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 4.3e-179 631.7 464 70.9
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 2.1e-178 629.4 464 71.1
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 2.8e-178 629.0 463 69.8
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 2.8e-178 629.0 464 71.1
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 2.8e-178 629.0 463 70.4
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.8e-177 626.3 463 70.0
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.2e-175 619.4 415 78.6
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 6.5e-175 617.8 467 69.2
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.2e-174 615.1 419 74.2
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 7.9e-173 610.9 457 70.2
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.9e-171 606.3 465 68.6
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.3e-170 603.6 464 68.8
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.4e-169 599.4 460 68.3
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 4.1e-169 598.6 491 65.6
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 5.1e-164 581.6 454 66.3
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 2.0e-163 579.7 456 65.6
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 2.0e-163 579.7 460 65.7
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.0e-160 569.7 416 69.0
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 6.7e-156 554.7 398 72.1
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 9.7e-147 524.2 318 84.0
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 8.6e-135 484.6 399 61.4
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 3.2e-134 482.6 382 67.5
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 2.9e-127 459.5 471 54.1
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 6.8e-124 448.4 403 56.1
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.6e-118 428.7 460 52.4
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 2.8e-101 373.2 287 63.1
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.6e-101 372.9 414 51.2
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.8e-100 370.5 258 75.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.0e-95 354.8 554 38.1
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.8e-84 317.4 188 85.1
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.6e-64 251.1 267 53.9
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 2.1e-56 224.2 251 53.0
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 2.7e-56 223.8 251 53.0
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.6e-56 223.0 207 61.4
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.2e-45 187.6 145 64.8
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.5e-43 181.4 119 83.2
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 2.0e-43 181.0 146 67.8
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 8.8e-39 165.6 166 59.0
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.1e-36 158.7 123 69.1
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.3e-29 135.2 399 28.8
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.8e-23 114.8 60 93.3
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.1e-17 95.5 57 84.2
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.8e-16 90.9 70 71.4
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.4e-15 88.6 59 67.8
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 5.9e-11 73.2 65 64.6


User provided reference genes

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