Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.7e-128 462.6 223 100.0
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.6e-73 280.0 205 75.1
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.7e-67 258.8 204 69.6
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.1e-66 257.3 204 69.1
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 2.4e-66 256.1 204 69.1
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 7.0e-66 254.6 205 67.3
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.0e-65 253.1 204 67.2
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 2.0e-65 253.1 204 67.2
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.7e-65 252.7 204 67.2
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.7e-65 252.7 204 68.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 3.5e-65 252.3 203 67.5
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 4.6e-65 251.9 204 67.2
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.7e-64 250.0 204 67.6
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 2.3e-64 249.6 204 65.2
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 2.3e-64 249.6 204 66.7
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 5.0e-64 248.4 217 62.2
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 6.6e-64 248.1 204 66.2
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 1.1e-63 247.3 204 65.2
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.1e-63 247.3 205 64.9
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 1.9e-63 246.5 205 65.9
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.5e-63 246.1 214 64.5
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 2.5e-63 246.1 204 65.7
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.5e-63 246.1 227 61.7
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 3.3e-63 245.7 205 67.3
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 3.3e-63 245.7 204 67.2
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 5.6e-63 245.0 204 65.2
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 5.6e-63 245.0 205 65.4
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 7.3e-63 244.6 204 64.7
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 9.5e-63 244.2 215 64.2
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 9.5e-63 244.2 204 65.2
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.2e-62 243.8 203 66.0
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.6e-62 243.4 204 65.2
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.1e-62 243.0 214 63.6
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 2.8e-62 242.7 204 65.2
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 3.6e-62 242.3 226 61.1
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 3.6e-62 242.3 204 64.7
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 6.2e-62 241.5 205 64.4
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 6.2e-62 241.5 204 65.2
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 6.2e-62 241.5 204 65.2
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 8.0e-62 241.1 204 64.2
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 8.0e-62 241.1 204 64.2
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 1.0e-61 240.7 204 63.2
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 1.0e-61 240.7 204 65.2
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 1.0e-61 240.7 204 64.7
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.0e-61 240.7 204 64.7
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.4e-61 240.4 204 62.3
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.4e-61 240.4 204 62.3
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 1.8e-61 240.0 204 64.7
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.8e-61 240.0 205 63.4
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.8e-61 240.0 204 64.7
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 3.1e-61 239.2 204 65.2
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 4.0e-61 238.8 205 62.9
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 4.0e-61 238.8 204 63.2
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 4.0e-61 238.8 204 64.2
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 5.2e-61 238.4 204 64.7
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 5.2e-61 238.4 204 63.7
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 5.2e-61 238.4 203 64.0
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 6.8e-61 238.0 216 62.5
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 6.8e-61 238.0 204 63.2
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 6.8e-61 238.0 204 65.2
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 8.9e-61 237.7 204 65.2
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 1.2e-60 237.3 203 62.6
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 1.5e-60 236.9 204 65.2
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 2.0e-60 236.5 204 64.7
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 2.6e-60 236.1 204 64.2
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 3.4e-60 235.7 204 62.7
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 3.4e-60 235.7 204 62.3
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 4.4e-60 235.3 216 62.0
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 4.4e-60 235.3 204 62.7
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 5.8e-60 235.0 199 64.3
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 7.5e-60 234.6 204 61.3
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 7.5e-60 234.6 204 63.2
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 7.5e-60 234.6 215 61.9
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 9.8e-60 234.2 201 61.7
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 9.8e-60 234.2 205 62.0
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 9.8e-60 234.2 214 61.2
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 9.8e-60 234.2 203 62.6
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.3e-59 233.8 204 61.3
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 1.7e-59 233.4 203 62.1
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 1.7e-59 233.4 204 61.3
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 2.2e-59 233.0 201 62.2
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 3.7e-59 232.3 204 61.3
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 3.7e-59 232.3 204 62.3
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 3.7e-59 232.3 204 61.3
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 3.7e-59 232.3 204 61.8
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 4.9e-59 231.9 204 62.3
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 6.4e-59 231.5 198 64.1
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 6.4e-59 231.5 203 61.1
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 6.4e-59 231.5 214 60.7
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 1.4e-58 230.3 203 62.6
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 1.4e-58 230.3 204 61.3
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 1.4e-58 230.3 204 61.3
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 1.4e-58 230.3 204 62.3
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 1.9e-58 229.9 204 62.3
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 2.4e-58 229.6 204 61.3
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 3.2e-58 229.2 204 61.3
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 3.2e-58 229.2 205 60.5
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 3.2e-58 229.2 205 60.5
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 3.2e-58 229.2 204 59.3
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 9.2e-58 227.6 204 62.3
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.2e-57 227.3 215 59.1
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 2.0e-57 226.5 204 61.3
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 2.0e-57 226.5 204 60.3
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 1.0e-56 224.2 201 62.2
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 3.9e-56 222.2 182 65.4
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 5.0e-56 221.9 199 59.8
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 4.7e-54 215.3 203 56.7
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 2.0e-52 209.9 213 58.2
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 2.0e-52 209.9 204 56.9
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 2.6e-52 209.5 204 55.4
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 2.9e-51 206.1 204 56.4
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 1.5e-47 193.7 203 54.2
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 5.6e-47 191.8 203 53.7
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 7.3e-47 191.4 174 61.5
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 2.6e-44 183.0 204 50.5
Cpa.g.sc34.179 Carica papaya HOM05D004351 ORTHO05D005196 3.4e-44 182.6 145 67.6
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 1.9e-42 176.8 204 48.0
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 2.1e-41 173.3 202 48.5
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.5e-41 172.6 200 51.0
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 6.6e-40 168.3 115 71.3
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 3.6e-38 162.5 141 65.2
CANSAT54G0522 Cannabis sativa HOM05D004351 ORTHO05D005196 4.4e-36 155.6 139 60.4
MELO3C031085.2 Cucumis melo HOM05D004351 ORTHO05D005196 6.6e-32 141.7 164 48.2
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 1.1e-29 134.4 174 45.4
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 2.0e-28 130.2 181 44.8
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 2.6e-28 129.8 189 42.3
CBR_g36942 Chara braunii HOM05D000019 ORTHO05D000002 9.9e-28 127.9 146 52.1
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 1.9e-23 113.6 177 37.9
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 9.0e-21 104.8 177 36.7
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 5.8e-20 102.1 179 39.7
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.2e-18 96.3 114 50.0
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 4.2e-18 95.9 103 55.3
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 1.8e-13 80.5 69 63.8
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 2.4e-13 80.1 69 62.3
arahy.Tifrunner.gnm1.ann1.FI1QHS Arachis hypogaea HOM05D004351 ORTHO05D005196 2.4e-13 80.1 79 57.0
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.3e-11 74.3 59 59.3
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.8e-11 72.8 49 75.5
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 9.3e-10 68.2 62 56.5
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.9e-07 60.5 52 57.7
GSVIVG01019275001 Vitis vinifera HOM05D004351 ORTHO05D005196 1.3e-06 57.8 42 64.3
GSVIVG01027881001 Vitis vinifera HOM05D003070 ORTHO05D003567 4.8e-06 55.8 42 61.9


User provided reference genes

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