Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.5e-58 228.4 105 100.0
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.7e-51 203.4 96 95.8
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.8e-49 198.4 96 92.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 4.1e-48 194.5 96 91.7
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 5.3e-48 194.1 96 89.6
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.3e-48 194.1 96 90.6
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.0e-48 193.4 96 89.6
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.0e-48 193.4 96 89.6
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 9.0e-48 193.4 96 89.6
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.0e-48 193.4 96 90.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.5e-47 192.6 96 89.6
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.5e-47 192.6 96 89.6
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 2.0e-47 192.2 96 89.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.0e-47 192.2 96 88.5
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.0e-47 192.2 96 88.5
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.0e-47 192.2 96 89.6
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 89.6
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 2.6e-47 191.8 98 87.8
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 88.5
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 88.5
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 89.6
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 88.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.6e-47 191.8 96 89.6
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 3.4e-47 191.4 96 88.5
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 3.4e-47 191.4 96 88.5
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.4e-47 191.4 96 89.6
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 3.4e-47 191.4 96 89.6
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.4e-47 191.4 96 89.6
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 4.5e-47 191.0 96 87.5
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.9e-47 190.7 96 88.5
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 5.9e-47 190.7 96 88.5
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.9e-47 190.7 96 88.5
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 7.7e-47 190.3 93 89.2
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 7.7e-47 190.3 96 88.5
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.0e-46 189.9 96 88.5
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.0e-46 189.9 93 89.2
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.0e-46 189.9 96 86.5
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.0e-46 189.9 96 87.5
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-46 189.5 96 87.5
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.3e-46 189.5 96 85.4
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.3e-46 189.5 96 86.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.3e-46 189.5 96 87.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 87.5
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 86.5
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 88.5
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 88.5
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 86.5
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.7e-46 189.1 96 86.5
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.2e-46 188.7 96 85.4
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 2.2e-46 188.7 96 85.4
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 2.9e-46 188.3 96 87.5
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.9e-46 188.3 96 88.5
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 2.9e-46 188.3 96 88.5
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.8e-46 188.0 96 87.5
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 3.8e-46 188.0 96 85.4
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 5.0e-46 187.6 96 86.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 5.0e-46 187.6 96 86.5
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 5.0e-46 187.6 96 86.5
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 8.5e-46 186.8 96 84.4
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.1e-45 186.4 96 85.4
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.4e-45 186.0 93 87.1
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.4e-45 186.0 96 86.5
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.4e-45 186.0 96 85.4
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.4e-45 186.0 96 84.4
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.9e-45 185.7 96 85.4
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.9e-45 185.7 96 84.4
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.9e-45 185.7 96 84.4
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 2.5e-45 185.3 96 83.3
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.5e-45 185.3 96 84.4
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.5e-45 185.3 103 82.5
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.5e-45 184.1 96 83.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 5.5e-45 184.1 96 83.3
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.5e-45 184.1 96 84.4
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.2e-45 183.7 96 83.3
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.4e-45 183.3 96 83.3
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.2e-44 183.0 96 81.2
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 2.1e-44 182.2 96 85.4
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 2.1e-44 182.2 96 84.4
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 2.1e-44 182.2 96 84.4
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.1e-44 182.2 96 84.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.7e-44 181.8 92 85.9
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.7e-44 181.8 96 84.4
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.7e-44 181.8 96 85.4
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 2.7e-44 181.8 96 82.3
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.6e-44 181.0 96 80.2
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 4.6e-44 181.0 99 82.8
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 4.6e-44 181.0 92 84.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.1e-44 180.6 96 82.3
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.3e-43 178.7 92 84.8
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.3e-43 178.7 96 82.3
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.3e-43 178.7 92 84.8
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 5.1e-43 177.6 92 83.7
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 6.7e-43 177.2 92 83.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 6.7e-43 177.2 92 83.7
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 6.7e-43 177.2 92 83.7
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 6.7e-43 177.2 92 83.7
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 6.7e-43 177.2 92 83.7
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 3.3e-42 174.9 92 81.5
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 3.3e-42 174.9 117 69.2
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.3e-41 172.9 96 77.1
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 6.3e-41 170.6 118 67.8
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.1e-40 168.3 96 76.0
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.1e-40 168.3 96 76.0
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 6.9e-40 167.2 96 77.1
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.6e-39 165.2 96 76.0
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.4e-39 164.9 83 83.1
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.4e-39 164.9 96 74.0
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.5e-39 164.5 96 77.1
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 7.2e-37 157.1 161 50.3
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 7.2e-37 157.1 180 48.9
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.8e-35 152.5 172 47.1
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.3e-34 148.3 91 75.8
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.6e-31 139.4 97 63.9
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.5e-29 132.9 121 57.0
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 6.1e-28 127.5 96 55.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 1.0e-27 126.7 96 58.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 9.7e-26 120.2 59 88.1
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 3.8e-22 108.2 53 88.7
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 8.5e-22 107.1 54 87.0
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-21 106.7 74 63.5
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 3.2e-21 105.1 54 85.2
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.4e-19 99.8 66 65.2
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.8e-19 97.4 54 79.6
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 7.5e-18 94.0 48 87.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.7e-17 92.8 45 91.1
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.1e-16 90.1 77 55.8
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.4e-16 89.7 45 88.9
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.2e-15 86.7 43 88.4
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.6e-15 86.3 43 86.0
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 5.9e-15 84.3 41 90.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.3e-14 83.2 43 86.0
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 2.2e-14 82.4 42 90.5
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 3.6e-12 75.1 42 83.3
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.3e-11 72.4 37 83.8
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-09 66.2 46 63.0
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.7e-09 66.2 37 73.0
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-08 63.5 32 90.6
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.2e-08 60.5 30 86.7


User provided reference genes

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